Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 GXYLT1P2-201ENST00000433312 1230 ntBASIC27.25■■□□□ 1.95
NCBP3Q53F19 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC27.25■■□□□ 1.95
NCBP3Q53F19 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
NCBP3Q53F19 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
NCBP3Q53F19 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
NCBP3Q53F19 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
NCBP3Q53F19 TERF1P5-201ENST00000477545 1207 ntBASIC27.24■■□□□ 1.95
NCBP3Q53F19 MFSD11-216ENST00000590393 1141 ntBASIC27.24■■□□□ 1.95
NCBP3Q53F19 PALM-208ENST00000592155 2272 ntTSL 4 BASIC27.24■■□□□ 1.95
NCBP3Q53F19 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC27.23■■□□□ 1.95
NCBP3Q53F19 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
NCBP3Q53F19 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
NCBP3Q53F19 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 SPI1-203ENST00000533030 661 ntTSL 2 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
NCBP3Q53F19 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
NCBP3Q53F19 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NCBP3Q53F19 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC27.22■■□□□ 1.95
NCBP3Q53F19 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.22■■□□□ 1.95
NCBP3Q53F19 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC27.22■■□□□ 1.95
NCBP3Q53F19 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
NCBP3Q53F19 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
NCBP3Q53F19 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
NCBP3Q53F19 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
NCBP3Q53F19 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC27.21■■□□□ 1.95
NCBP3Q53F19 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
NCBP3Q53F19 PTPA-214ENST00000423100 988 ntTSL 2 BASIC27.21■■□□□ 1.95
NCBP3Q53F19 DUX4L16-201ENST00000555130 1264 ntBASIC27.21■■□□□ 1.95
NCBP3Q53F19 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.21■■□□□ 1.95
NCBP3Q53F19 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC27.21■■□□□ 1.95
NCBP3Q53F19 BNIP3P41-202ENST00000616656 861 ntBASIC27.21■■□□□ 1.95
NCBP3Q53F19 AC092437.1-201ENST00000624794 1048 ntBASIC27.21■■□□□ 1.95
NCBP3Q53F19 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
NCBP3Q53F19 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
NCBP3Q53F19 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
NCBP3Q53F19 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC27.21■■□□□ 1.95
NCBP3Q53F19 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
NCBP3Q53F19 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
NCBP3Q53F19 AC005229.4-201ENST00000610085 2198 ntBASIC27.21■■□□□ 1.95
NCBP3Q53F19 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC27.21■■□□□ 1.95
NCBP3Q53F19 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.95
NCBP3Q53F19 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC27.2■■□□□ 1.95
NCBP3Q53F19 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC27.2■■□□□ 1.94
NCBP3Q53F19 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
NCBP3Q53F19 ERF-202ENST00000440177 2032 ntTSL 2 BASIC27.2■■□□□ 1.94
NCBP3Q53F19 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC27.2■■□□□ 1.94
NCBP3Q53F19 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.94
NCBP3Q53F19 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
NCBP3Q53F19 AF106564.1-201ENST00000607058 2553 ntBASIC27.2■■□□□ 1.94
NCBP3Q53F19 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC27.2■■□□□ 1.94
NCBP3Q53F19 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
NCBP3Q53F19 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
NCBP3Q53F19 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
NCBP3Q53F19 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
NCBP3Q53F19 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
NCBP3Q53F19 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
NCBP3Q53F19 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
NCBP3Q53F19 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC27.19■■□□□ 1.94
NCBP3Q53F19 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
NCBP3Q53F19 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
NCBP3Q53F19 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
NCBP3Q53F19 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
NCBP3Q53F19 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.18■■□□□ 1.94
NCBP3Q53F19 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC27.18■■□□□ 1.94
NCBP3Q53F19 AC013268.1-206ENST00000638368 961 ntBASIC27.18■■□□□ 1.94
NCBP3Q53F19 AC112229.1-201ENST00000639295 961 ntBASIC27.18■■□□□ 1.94
NCBP3Q53F19 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
NCBP3Q53F19 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
NCBP3Q53F19 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC27.17■■□□□ 1.94
NCBP3Q53F19 AC116050.2-201ENST00000612102 1779 ntBASIC27.17■■□□□ 1.94
NCBP3Q53F19 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
NCBP3Q53F19 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC27.17■■□□□ 1.94
NCBP3Q53F19 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC27.17■■□□□ 1.94
NCBP3Q53F19 AC121338.2-201ENST00000622535 1744 ntBASIC27.17■■□□□ 1.94
NCBP3Q53F19 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
NCBP3Q53F19 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms