Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 DUX4L19-201ENST00000557448 1267 ntBASIC19.29■□□□□ 0.68
RFX4Q33E94 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.29■□□□□ 0.68
RFX4Q33E94 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.29■□□□□ 0.68
RFX4Q33E94 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFX4Q33E94 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.28■□□□□ 0.68
RFX4Q33E94 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.28■□□□□ 0.68
RFX4Q33E94 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RFX4Q33E94 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RFX4Q33E94 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.28■□□□□ 0.68
RFX4Q33E94 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 SERBP1P1-201ENST00000396021 1160 ntBASIC19.28■□□□□ 0.68
RFX4Q33E94 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
RFX4Q33E94 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFX4Q33E94 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
RFX4Q33E94 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RFX4Q33E94 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RFX4Q33E94 AL391422.3-201ENST00000603791 2761 ntBASIC19.27■□□□□ 0.68
RFX4Q33E94 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.27■□□□□ 0.68
RFX4Q33E94 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.27■□□□□ 0.68
RFX4Q33E94 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.27■□□□□ 0.68
RFX4Q33E94 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.27■□□□□ 0.68
RFX4Q33E94 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.27■□□□□ 0.68
RFX4Q33E94 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.27■□□□□ 0.68
RFX4Q33E94 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.27■□□□□ 0.68
RFX4Q33E94 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.27■□□□□ 0.68
RFX4Q33E94 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.27■□□□□ 0.68
RFX4Q33E94 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 AC121338.2-201ENST00000622535 1744 ntBASIC19.27■□□□□ 0.68
RFX4Q33E94 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
RFX4Q33E94 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
RFX4Q33E94 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.27■□□□□ 0.68
RFX4Q33E94 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFX4Q33E94 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
RFX4Q33E94 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.27■□□□□ 0.67
RFX4Q33E94 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
RFX4Q33E94 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFX4Q33E94 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.26■□□□□ 0.67
RFX4Q33E94 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 AC007225.1-201ENST00000566331 1836 ntBASIC19.26■□□□□ 0.67
RFX4Q33E94 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 AL356441.2-201ENST00000443009 864 ntBASIC19.26■□□□□ 0.67
RFX4Q33E94 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.26■□□□□ 0.67
RFX4Q33E94 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.26■□□□□ 0.67
RFX4Q33E94 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RFX4Q33E94 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
RFX4Q33E94 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.26■□□□□ 0.67
RFX4Q33E94 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFX4Q33E94 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFX4Q33E94 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RFX4Q33E94 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RFX4Q33E94 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.25■□□□□ 0.67
RFX4Q33E94 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
RFX4Q33E94 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 AP005435.1-201ENST00000529293 1178 ntBASIC19.25■□□□□ 0.67
RFX4Q33E94 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.25■□□□□ 0.67
RFX4Q33E94 AC136469.2-201ENST00000623944 1028 ntBASIC19.25■□□□□ 0.67
RFX4Q33E94 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFX4Q33E94 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms