Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDH12P55289 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CDH12P55289 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDH12P55289 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDH12P55289 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDH12P55289 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.33■□□□□ 0.68
CDH12P55289 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.33■□□□□ 0.68
CDH12P55289 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.33■□□□□ 0.68
CDH12P55289 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.33■□□□□ 0.68
CDH12P55289 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.33■□□□□ 0.68
CDH12P55289 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDH12P55289 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.33■□□□□ 0.68
CDH12P55289 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH12P55289 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.33■□□□□ 0.68
CDH12P55289 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CDH12P55289 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH12P55289 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH12P55289 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDH12P55289 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.32■□□□□ 0.68
CDH12P55289 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.32■□□□□ 0.68
CDH12P55289 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.32■□□□□ 0.68
CDH12P55289 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
CDH12P55289 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CDH12P55289 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.32■□□□□ 0.68
CDH12P55289 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CDH12P55289 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.32■□□□□ 0.68
CDH12P55289 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 AL355001.2-201ENST00000620617 1191 ntBASIC19.32■□□□□ 0.68
CDH12P55289 AC105233.4-201ENST00000642045 216 ntBASIC19.32■□□□□ 0.68
CDH12P55289 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CDH12P55289 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.32■□□□□ 0.68
CDH12P55289 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.32■□□□□ 0.68
CDH12P55289 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH12P55289 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CDH12P55289 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 AL121603.2-201ENST00000557373 2117 ntBASIC19.31■□□□□ 0.68
CDH12P55289 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.31■□□□□ 0.68
CDH12P55289 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.31■□□□□ 0.68
CDH12P55289 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.31■□□□□ 0.68
CDH12P55289 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CDH12P55289 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH12P55289 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.31■□□□□ 0.68
CDH12P55289 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CDH12P55289 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH12P55289 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 MIR939-201ENST00000401314 82 ntBASIC19.3■□□□□ 0.68
CDH12P55289 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
CDH12P55289 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.3■□□□□ 0.68
CDH12P55289 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 AC009237.3-201ENST00000393279 1427 ntBASIC19.3■□□□□ 0.68
CDH12P55289 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CDH12P55289 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CDH12P55289 AL391422.3-201ENST00000603791 2761 ntBASIC19.3■□□□□ 0.68
CDH12P55289 RASA4CP-201ENST00000424092 1398 ntBASIC19.3■□□□□ 0.68
CDH12P55289 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH12P55289 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH12P55289 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH12P55289 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
CDH12P55289 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.29■□□□□ 0.68
CDH12P55289 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CDH12P55289 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
CDH12P55289 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.29■□□□□ 0.68
CDH12P55289 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH12P55289 AF213884.3-201ENST00000563833 479 ntBASIC19.29■□□□□ 0.68
CDH12P55289 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
CDH12P55289 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.29■□□□□ 0.68
CDH12P55289 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH12P55289 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms