Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.69■■□□□ 1.06
LIG3P49916 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
LIG3P49916 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LIG3P49916 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.69■■□□□ 1.06
LIG3P49916 AC034268.1-201ENST00000441047 882 ntBASIC21.69■■□□□ 1.06
LIG3P49916 AL162430.1-201ENST00000480705 870 ntBASIC21.69■■□□□ 1.06
LIG3P49916 CCDC92B-201ENST00000575506 885 ntBASIC21.69■■□□□ 1.06
LIG3P49916 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
LIG3P49916 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
LIG3P49916 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.69■■□□□ 1.06
LIG3P49916 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 BX005040.4-201ENST00000637145 1518 ntBASIC21.69■■□□□ 1.06
LIG3P49916 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
LIG3P49916 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.69■■□□□ 1.06
LIG3P49916 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
LIG3P49916 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
LIG3P49916 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.68■■□□□ 1.06
LIG3P49916 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
LIG3P49916 AC079089.2-201ENST00000531211 1277 ntBASIC21.68■■□□□ 1.06
LIG3P49916 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.68■■□□□ 1.06
LIG3P49916 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 AC087742.1-201ENST00000575880 1738 ntBASIC21.68■■□□□ 1.06
LIG3P49916 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIG3P49916 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.67■■□□□ 1.06
LIG3P49916 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIG3P49916 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.67■■□□□ 1.06
LIG3P49916 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIG3P49916 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIG3P49916 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIG3P49916 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIG3P49916 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
LIG3P49916 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.67■■□□□ 1.06
LIG3P49916 DUX4L2-201ENST00000561772 1275 ntBASIC21.67■■□□□ 1.06
LIG3P49916 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.67■■□□□ 1.06
LIG3P49916 DUX4L6-201ENST00000626483 1275 ntBASIC21.67■■□□□ 1.06
LIG3P49916 DUX4L1-201ENST00000627662 1275 ntBASIC21.67■■□□□ 1.06
LIG3P49916 DUX4L8-201ENST00000629013 1275 ntBASIC21.67■■□□□ 1.06
LIG3P49916 DUX4L3-201ENST00000630187 1275 ntBASIC21.67■■□□□ 1.06
LIG3P49916 DUX4L7-201ENST00000630678 1275 ntBASIC21.67■■□□□ 1.06
LIG3P49916 DUX4L5-201ENST00000630834 1275 ntBASIC21.67■■□□□ 1.06
LIG3P49916 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIG3P49916 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIG3P49916 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.67■■□□□ 1.06
LIG3P49916 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIG3P49916 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIG3P49916 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LIG3P49916 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIG3P49916 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.66■■□□□ 1.06
LIG3P49916 TERF1P2-201ENST00000583350 1212 ntBASIC21.66■■□□□ 1.06
LIG3P49916 TPRG1LP1-201ENST00000598702 760 ntBASIC21.66■■□□□ 1.06
LIG3P49916 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIG3P49916 AC244015.2-201ENST00000616358 1861 ntBASIC21.66■■□□□ 1.06
LIG3P49916 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.66■■□□□ 1.06
LIG3P49916 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
LIG3P49916 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
LIG3P49916 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
LIG3P49916 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
LIG3P49916 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.65■■□□□ 1.06
LIG3P49916 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.65■■□□□ 1.06
LIG3P49916 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
LIG3P49916 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIG3P49916 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
LIG3P49916 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LIG3P49916 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
LIG3P49916 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.64■■□□□ 1.06
LIG3P49916 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
LIG3P49916 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.64■■□□□ 1.05
LIG3P49916 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
LIG3P49916 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIG3P49916 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.64■■□□□ 1.05
LIG3P49916 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.64■■□□□ 1.05
LIG3P49916 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.64■■□□□ 1.05
LIG3P49916 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LIG3P49916 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIG3P49916 KRT18P14-201ENST00000534205 1250 ntBASIC21.64■■□□□ 1.05
LIG3P49916 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIG3P49916 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms