Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RFX3P48380 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
RFX3P48380 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
RFX3P48380 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.46■□□□□ 0.71
RFX3P48380 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.46■□□□□ 0.71
RFX3P48380 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
RFX3P48380 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.46■□□□□ 0.71
RFX3P48380 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.46■□□□□ 0.71
RFX3P48380 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.46■□□□□ 0.71
RFX3P48380 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.46■□□□□ 0.71
RFX3P48380 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.46■□□□□ 0.71
RFX3P48380 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RFX3P48380 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.46■□□□□ 0.71
RFX3P48380 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.46■□□□□ 0.71
RFX3P48380 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RFX3P48380 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.45■□□□□ 0.7
RFX3P48380 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.45■□□□□ 0.7
RFX3P48380 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.45■□□□□ 0.7
RFX3P48380 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.45■□□□□ 0.7
RFX3P48380 AC087623.3-201ENST00000607047 1098 ntBASIC19.45■□□□□ 0.7
RFX3P48380 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
RFX3P48380 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX3P48380 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX3P48380 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RFX3P48380 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.44■□□□□ 0.7
RFX3P48380 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RFX3P48380 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX3P48380 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.44■□□□□ 0.7
RFX3P48380 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX3P48380 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.44■□□□□ 0.7
RFX3P48380 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RFX3P48380 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX3P48380 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX3P48380 DUX4L2-201ENST00000561772 1275 ntBASIC19.44■□□□□ 0.7
RFX3P48380 EEF1DP3-203ENST00000566025 782 ntBASIC19.44■□□□□ 0.7
RFX3P48380 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.44■□□□□ 0.7
RFX3P48380 AC053503.5-201ENST00000601508 636 ntBASIC19.44■□□□□ 0.7
RFX3P48380 AC104187.1-201ENST00000607510 612 ntBASIC19.44■□□□□ 0.7
RFX3P48380 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.44■□□□□ 0.7
RFX3P48380 DUX4L6-201ENST00000626483 1275 ntBASIC19.44■□□□□ 0.7
RFX3P48380 DUX4L1-201ENST00000627662 1275 ntBASIC19.44■□□□□ 0.7
RFX3P48380 DUX4L8-201ENST00000629013 1275 ntBASIC19.44■□□□□ 0.7
RFX3P48380 DUX4L3-201ENST00000630187 1275 ntBASIC19.44■□□□□ 0.7
RFX3P48380 DUX4L7-201ENST00000630678 1275 ntBASIC19.44■□□□□ 0.7
RFX3P48380 DUX4L5-201ENST00000630834 1275 ntBASIC19.44■□□□□ 0.7
RFX3P48380 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX3P48380 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX3P48380 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX3P48380 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX3P48380 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
RFX3P48380 AC004854.2-201ENST00000608450 1441 ntBASIC19.43■□□□□ 0.7
RFX3P48380 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
RFX3P48380 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
RFX3P48380 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.43■□□□□ 0.7
RFX3P48380 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.43■□□□□ 0.7
RFX3P48380 AC097381.1-201ENST00000429019 1296 ntBASIC19.43■□□□□ 0.7
RFX3P48380 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX3P48380 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.43■□□□□ 0.7
RFX3P48380 RARRES2P6-201ENST00000567333 442 ntBASIC19.43■□□□□ 0.7
RFX3P48380 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX3P48380 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX3P48380 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX3P48380 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms