Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.86■□□□□ 0.93
CXCL12P48061 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.86■□□□□ 0.93
CXCL12P48061 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.86■□□□□ 0.93
CXCL12P48061 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.86■□□□□ 0.93
CXCL12P48061 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.86■□□□□ 0.93
CXCL12P48061 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL12P48061 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CXCL12P48061 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.85■□□□□ 0.93
CXCL12P48061 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.85■□□□□ 0.93
CXCL12P48061 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CXCL12P48061 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.85■□□□□ 0.93
CXCL12P48061 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CXCL12P48061 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.85■□□□□ 0.93
CXCL12P48061 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 CYP21A1P-202ENST00000354927 1481 ntBASIC20.85■□□□□ 0.93
CXCL12P48061 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.85■□□□□ 0.93
CXCL12P48061 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 C11orf96-202ENST00000528572 1834 ntBASIC20.85■□□□□ 0.93
CXCL12P48061 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.85■□□□□ 0.93
CXCL12P48061 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL12P48061 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
CXCL12P48061 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.84■□□□□ 0.93
CXCL12P48061 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 AC092053.2-201ENST00000640557 1818 ntBASIC20.84■□□□□ 0.93
CXCL12P48061 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.84■□□□□ 0.93
CXCL12P48061 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.84■□□□□ 0.93
CXCL12P48061 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.84■□□□□ 0.93
CXCL12P48061 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 AC105020.6-201ENST00000621523 1217 ntBASIC20.84■□□□□ 0.93
CXCL12P48061 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL12P48061 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.84■□□□□ 0.93
CXCL12P48061 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
CXCL12P48061 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.83■□□□□ 0.93
CXCL12P48061 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CXCL12P48061 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.83■□□□□ 0.93
CXCL12P48061 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.83■□□□□ 0.93
CXCL12P48061 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
CXCL12P48061 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.83■□□□□ 0.93
CXCL12P48061 MTDHP1-201ENST00000605323 784 ntBASIC20.83■□□□□ 0.93
CXCL12P48061 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL12P48061 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.83■□□□□ 0.93
CXCL12P48061 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CXCL12P48061 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
CXCL12P48061 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CXCL12P48061 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CXCL12P48061 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CXCL12P48061 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.82■□□□□ 0.92
CXCL12P48061 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.82■□□□□ 0.92
CXCL12P48061 AL023875.1-201ENST00000640777 796 ntBASIC20.82■□□□□ 0.92
CXCL12P48061 AL049637.2-201ENST00000641778 930 ntBASIC20.82■□□□□ 0.92
CXCL12P48061 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.82■□□□□ 0.92
CXCL12P48061 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL12P48061 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.82■□□□□ 0.92
CXCL12P48061 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL12P48061 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL12P48061 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.81■□□□□ 0.92
CXCL12P48061 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.81■□□□□ 0.92
CXCL12P48061 AL135905.2-201ENST00000584934 1404 ntBASIC20.81■□□□□ 0.92
CXCL12P48061 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL12P48061 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.81■□□□□ 0.92
CXCL12P48061 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL12P48061 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CXCL12P48061 AC133681.1-201ENST00000465482 601 ntBASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms