Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
CHRNA4P43681 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.98■□□□□ 0.95
CHRNA4P43681 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.98■□□□□ 0.95
CHRNA4P43681 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.98■□□□□ 0.95
CHRNA4P43681 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.98■□□□□ 0.95
CHRNA4P43681 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.98■□□□□ 0.95
CHRNA4P43681 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.98■□□□□ 0.95
CHRNA4P43681 MIR5787-201ENST00000611784 55 ntBASIC20.98■□□□□ 0.95
CHRNA4P43681 AC120498.10-201ENST00000621827 505 ntBASIC20.98■□□□□ 0.95
CHRNA4P43681 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA4P43681 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.97■□□□□ 0.95
CHRNA4P43681 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHRNA4P43681 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.97■□□□□ 0.95
CHRNA4P43681 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.97■□□□□ 0.95
CHRNA4P43681 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHRNA4P43681 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.97■□□□□ 0.95
CHRNA4P43681 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHRNA4P43681 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.97■□□□□ 0.95
CHRNA4P43681 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.97■□□□□ 0.95
CHRNA4P43681 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.97■□□□□ 0.95
CHRNA4P43681 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.97■□□□□ 0.95
CHRNA4P43681 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.97■□□□□ 0.95
CHRNA4P43681 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.97■□□□□ 0.95
CHRNA4P43681 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CHRNA4P43681 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
CHRNA4P43681 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.96■□□□□ 0.95
CHRNA4P43681 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHRNA4P43681 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.96■□□□□ 0.95
CHRNA4P43681 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHRNA4P43681 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.96■□□□□ 0.95
CHRNA4P43681 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHRNA4P43681 KRT18P20-201ENST00000548986 1279 ntBASIC20.96■□□□□ 0.95
CHRNA4P43681 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHRNA4P43681 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CHRNA4P43681 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.96■□□□□ 0.95
CHRNA4P43681 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CHRNA4P43681 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHRNA4P43681 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.96■□□□□ 0.95
CHRNA4P43681 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CHRNA4P43681 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.96■□□□□ 0.95
CHRNA4P43681 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CHRNA4P43681 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.95■□□□□ 0.94
CHRNA4P43681 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.95■□□□□ 0.94
CHRNA4P43681 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.95■□□□□ 0.94
CHRNA4P43681 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.95■□□□□ 0.94
CHRNA4P43681 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.95■□□□□ 0.94
CHRNA4P43681 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.95■□□□□ 0.94
CHRNA4P43681 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.95■□□□□ 0.94
CHRNA4P43681 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHRNA4P43681 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.94■□□□□ 0.94
CHRNA4P43681 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.94■□□□□ 0.94
CHRNA4P43681 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.94■□□□□ 0.94
CHRNA4P43681 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.94■□□□□ 0.94
CHRNA4P43681 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CHRNA4P43681 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHRNA4P43681 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
CHRNA4P43681 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.93■□□□□ 0.94
CHRNA4P43681 AC121338.2-201ENST00000622535 1744 ntBASIC20.93■□□□□ 0.94
CHRNA4P43681 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.93■□□□□ 0.94
CHRNA4P43681 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CHRNA4P43681 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.93■□□□□ 0.94
CHRNA4P43681 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.93■□□□□ 0.94
CHRNA4P43681 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.93■□□□□ 0.94
CHRNA4P43681 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHRNA4P43681 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.93■□□□□ 0.94
CHRNA4P43681 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CHRNA4P43681 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms