Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FAM201B-201ENST00000458407 597 ntBASIC21.7■■□□□ 1.06
HMGA1P17096 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.7■■□□□ 1.06
HMGA1P17096 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
HMGA1P17096 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HMGA1P17096 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGA1P17096 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGA1P17096 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.69■■□□□ 1.06
HMGA1P17096 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HMGA1P17096 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.69■■□□□ 1.06
HMGA1P17096 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.69■■□□□ 1.06
HMGA1P17096 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGA1P17096 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGA1P17096 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
HMGA1P17096 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.68■■□□□ 1.06
HMGA1P17096 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGA1P17096 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 AL117328.2-201ENST00000624617 1940 ntBASIC21.67■■□□□ 1.06
HMGA1P17096 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGA1P17096 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
HMGA1P17096 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGA1P17096 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGA1P17096 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGA1P17096 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.67■■□□□ 1.06
HMGA1P17096 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGA1P17096 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.67■■□□□ 1.06
HMGA1P17096 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGA1P17096 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGA1P17096 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGA1P17096 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGA1P17096 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGA1P17096 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
HMGA1P17096 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGA1P17096 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGA1P17096 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGA1P17096 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGA1P17096 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
HMGA1P17096 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGA1P17096 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
HMGA1P17096 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGA1P17096 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGA1P17096 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
HMGA1P17096 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGA1P17096 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
HMGA1P17096 AC116050.2-201ENST00000612102 1779 ntBASIC21.66■■□□□ 1.06
HMGA1P17096 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGA1P17096 AC133561.1-201ENST00000568600 2415 ntBASIC21.66■■□□□ 1.06
HMGA1P17096 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGA1P17096 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGA1P17096 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGA1P17096 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGA1P17096 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
HMGA1P17096 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
HMGA1P17096 CYP21A1P-202ENST00000354927 1481 ntBASIC21.65■■□□□ 1.06
HMGA1P17096 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGA1P17096 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
HMGA1P17096 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGA1P17096 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGA1P17096 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGA1P17096 KRT18P68-201ENST00000392293 1000 ntBASIC21.65■■□□□ 1.06
HMGA1P17096 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
HMGA1P17096 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HMGA1P17096 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGA1P17096 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGA1P17096 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
HMGA1P17096 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGA1P17096 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGA1P17096 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGA1P17096 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGA1P17096 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms