Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.26■□□□□ 0.99
TOP3BO95985 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.26■□□□□ 0.99
TOP3BO95985 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.26■□□□□ 0.99
TOP3BO95985 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.26■□□□□ 0.99
TOP3BO95985 KRT18P11-201ENST00000435214 1283 ntBASIC21.26■□□□□ 0.99
TOP3BO95985 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
TOP3BO95985 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.26■□□□□ 0.99
TOP3BO95985 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.26■□□□□ 0.99
TOP3BO95985 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.26■□□□□ 0.99
TOP3BO95985 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TOP3BO95985 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.25■□□□□ 0.99
TOP3BO95985 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
TOP3BO95985 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TOP3BO95985 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TOP3BO95985 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TOP3BO95985 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.25■□□□□ 0.99
TOP3BO95985 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.25■□□□□ 0.99
TOP3BO95985 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.25■□□□□ 0.99
TOP3BO95985 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.25■□□□□ 0.99
TOP3BO95985 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.25■□□□□ 0.99
TOP3BO95985 AC098934.4-201ENST00000564127 592 ntBASIC21.25■□□□□ 0.99
TOP3BO95985 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TOP3BO95985 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.24■□□□□ 0.99
TOP3BO95985 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.24■□□□□ 0.99
TOP3BO95985 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TOP3BO95985 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TOP3BO95985 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.24■□□□□ 0.99
TOP3BO95985 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.24■□□□□ 0.99
TOP3BO95985 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.24■□□□□ 0.99
TOP3BO95985 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TOP3BO95985 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.23■□□□□ 0.99
TOP3BO95985 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.23■□□□□ 0.99
TOP3BO95985 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
TOP3BO95985 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.23■□□□□ 0.99
TOP3BO95985 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.23■□□□□ 0.99
TOP3BO95985 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TOP3BO95985 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
TOP3BO95985 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.22■□□□□ 0.99
TOP3BO95985 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.22■□□□□ 0.99
TOP3BO95985 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.22■□□□□ 0.99
TOP3BO95985 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TOP3BO95985 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TOP3BO95985 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TOP3BO95985 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TOP3BO95985 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TOP3BO95985 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
TOP3BO95985 PRORSD1P-201ENST00000295112 541 ntBASIC21.21■□□□□ 0.99
TOP3BO95985 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.21■□□□□ 0.99
TOP3BO95985 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TOP3BO95985 POU5F1P3-201ENST00000428824 1078 ntBASIC21.21■□□□□ 0.99
TOP3BO95985 RPS2P52-201ENST00000469610 820 ntBASIC21.21■□□□□ 0.99
TOP3BO95985 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.21■□□□□ 0.99
TOP3BO95985 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.21■□□□□ 0.99
TOP3BO95985 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.21■□□□□ 0.99
TOP3BO95985 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.21■□□□□ 0.99
TOP3BO95985 AC005181.1-201ENST00000604782 1256 ntBASIC21.21■□□□□ 0.99
TOP3BO95985 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TOP3BO95985 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TOP3BO95985 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.21■□□□□ 0.99
TOP3BO95985 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TOP3BO95985 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TOP3BO95985 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TOP3BO95985 BX005040.4-201ENST00000637145 1518 ntBASIC21.2■□□□□ 0.98
TOP3BO95985 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TOP3BO95985 KRT18P29-201ENST00000397031 1267 ntBASIC21.2■□□□□ 0.98
TOP3BO95985 SLC29A4P1-201ENST00000398760 971 ntBASIC21.2■□□□□ 0.98
TOP3BO95985 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TOP3BO95985 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TOP3BO95985 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.2■□□□□ 0.98
TOP3BO95985 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms