Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.72■□□□□ 0.75
PROM1O43490 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.72■□□□□ 0.75
PROM1O43490 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.72■□□□□ 0.75
PROM1O43490 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PROM1O43490 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PROM1O43490 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.72■□□□□ 0.75
PROM1O43490 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.71■□□□□ 0.75
PROM1O43490 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.71■□□□□ 0.75
PROM1O43490 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.71■□□□□ 0.75
PROM1O43490 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
PROM1O43490 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.71■□□□□ 0.75
PROM1O43490 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.71■□□□□ 0.75
PROM1O43490 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.71■□□□□ 0.75
PROM1O43490 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PROM1O43490 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
PROM1O43490 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PROM1O43490 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PROM1O43490 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PROM1O43490 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PROM1O43490 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PROM1O43490 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PROM1O43490 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PROM1O43490 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PROM1O43490 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.7■□□□□ 0.74
PROM1O43490 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PROM1O43490 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
PROM1O43490 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.69■□□□□ 0.74
PROM1O43490 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
PROM1O43490 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.69■□□□□ 0.74
PROM1O43490 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
PROM1O43490 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.69■□□□□ 0.74
PROM1O43490 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.69■□□□□ 0.74
PROM1O43490 SLC7A5P1-201ENST00000568957 537 ntBASIC19.69■□□□□ 0.74
PROM1O43490 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PROM1O43490 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PROM1O43490 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
PROM1O43490 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.68■□□□□ 0.74
PROM1O43490 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.68■□□□□ 0.74
PROM1O43490 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.68■□□□□ 0.74
PROM1O43490 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.68■□□□□ 0.74
PROM1O43490 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.68■□□□□ 0.74
PROM1O43490 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.68■□□□□ 0.74
PROM1O43490 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.68■□□□□ 0.74
PROM1O43490 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.68■□□□□ 0.74
PROM1O43490 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
PROM1O43490 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.67■□□□□ 0.74
PROM1O43490 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PROM1O43490 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.67■□□□□ 0.74
PROM1O43490 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.67■□□□□ 0.74
PROM1O43490 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.67■□□□□ 0.74
PROM1O43490 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.67■□□□□ 0.74
PROM1O43490 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 RARRES2P11-201ENST00000635158 484 ntBASIC19.67■□□□□ 0.74
PROM1O43490 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PROM1O43490 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PROM1O43490 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.67■□□□□ 0.74
PROM1O43490 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms