Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
NPHP1O15259 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
NPHP1O15259 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP1O15259 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP1O15259 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC26.2■■□□□ 1.79
NPHP1O15259 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.79
NPHP1O15259 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP1O15259 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP1O15259 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
NPHP1O15259 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
NPHP1O15259 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC26.2■■□□□ 1.78
NPHP1O15259 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.78
NPHP1O15259 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC26.2■■□□□ 1.78
NPHP1O15259 C1QBPP2-201ENST00000528754 825 ntBASIC26.2■■□□□ 1.78
NPHP1O15259 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
NPHP1O15259 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 AC100791.3-201ENST00000617619 330 ntBASIC26.2■■□□□ 1.78
NPHP1O15259 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC26.2■■□□□ 1.78
NPHP1O15259 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP1O15259 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.2■■□□□ 1.78
NPHP1O15259 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC26.19■■□□□ 1.78
NPHP1O15259 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 MIR718-201ENST00000390190 70 ntBASIC26.19■■□□□ 1.78
NPHP1O15259 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC26.19■■□□□ 1.78
NPHP1O15259 KRT17P3-201ENST00000420566 1262 ntBASIC26.19■■□□□ 1.78
NPHP1O15259 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
NPHP1O15259 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.19■■□□□ 1.78
NPHP1O15259 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC26.19■■□□□ 1.78
NPHP1O15259 AC092368.3-202ENST00000574180 1591 ntBASIC26.19■■□□□ 1.78
NPHP1O15259 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC26.19■■□□□ 1.78
NPHP1O15259 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
NPHP1O15259 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP1O15259 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP1O15259 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
NPHP1O15259 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP1O15259 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC26.18■■□□□ 1.78
NPHP1O15259 MCRIP2P1-201ENST00000394346 511 ntBASIC26.18■■□□□ 1.78
NPHP1O15259 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP1O15259 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC26.18■■□□□ 1.78
NPHP1O15259 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC26.18■■□□□ 1.78
NPHP1O15259 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP1O15259 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC26.18■■□□□ 1.78
NPHP1O15259 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP1O15259 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
NPHP1O15259 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC26.18■■□□□ 1.78
NPHP1O15259 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP1O15259 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC26.17■■□□□ 1.78
NPHP1O15259 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP1O15259 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
NPHP1O15259 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP1O15259 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP1O15259 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC26.17■■□□□ 1.78
NPHP1O15259 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP1O15259 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
NPHP1O15259 AC008403.3-201ENST00000598924 454 ntBASIC26.17■■□□□ 1.78
NPHP1O15259 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP1O15259 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP1O15259 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
NPHP1O15259 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
NPHP1O15259 AC092053.2-201ENST00000640557 1818 ntBASIC26.16■■□□□ 1.78
NPHP1O15259 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
NPHP1O15259 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.16■■□□□ 1.78
NPHP1O15259 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
NPHP1O15259 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
NPHP1O15259 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC26.16■■□□□ 1.78
NPHP1O15259 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.16■■□□□ 1.78
NPHP1O15259 PNMA6B-201ENST00000538162 1200 ntBASIC26.16■■□□□ 1.78
NPHP1O15259 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
NPHP1O15259 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC26.16■■□□□ 1.78
NPHP1O15259 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC26.16■■□□□ 1.78
NPHP1O15259 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP1O15259 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP1O15259 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
NPHP1O15259 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms