Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.92■□□□□ 0.62
COL6A6A6NMZ7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 FAM21FP-204ENST00000608637 956 ntBASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 AC110285.5-201ENST00000611501 352 ntBASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL6A6A6NMZ7 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 KRT8P9-201ENST00000558927 1449 ntBASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 AC005521.1-201ENST00000393351 872 ntBASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL6A6A6NMZ7 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
COL6A6A6NMZ7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
COL6A6A6NMZ7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 AC120498.8-201ENST00000614275 531 ntBASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A6A6NMZ7 KRT18P68-201ENST00000392293 1000 ntBASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A6A6NMZ7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms