Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC016405.3-201ENST00000607710 860 ntBASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA1Q9Y5I3 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PCDHA1Q9Y5I3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHA1Q9Y5I3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
PCDHA1Q9Y5I3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHA1Q9Y5I3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 SLC29A4P1-201ENST00000398760 971 ntBASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
PCDHA1Q9Y5I3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 AC093787.1-201ENST00000450396 207 ntBASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHA1Q9Y5I3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 AL512625.2-201ENST00000417533 625 ntBASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 RARRES2P4-201ENST00000514074 484 ntBASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHA1Q9Y5I3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 AL138781.1-201ENST00000566567 1274 ntBASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 AC142086.2-201ENST00000569753 217 ntBASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHA1Q9Y5I3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 MKRN4P-201ENST00000444706 1521 ntBASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 Z98882.1-201ENST00000622160 2253 ntBASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHA1Q9Y5I3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
PCDHA1Q9Y5I3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PCDHA1Q9Y5I3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.89■■□□□ 1.42
PCDHA1Q9Y5I3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCDHA1Q9Y5I3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms