Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 C1orf229-201ENST00000623686 2258 ntBASIC18.92■□□□□ 0.62
SHANK1Q9Y566 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 RPPH1-201ENST00000516869 333 ntBASIC18.92■□□□□ 0.62
SHANK1Q9Y566 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 MIR718-201ENST00000390190 70 ntBASIC18.92■□□□□ 0.62
SHANK1Q9Y566 MIR1224-201ENST00000408193 85 ntBASIC18.92■□□□□ 0.62
SHANK1Q9Y566 AC012618.2-201ENST00000428058 849 ntBASIC18.92■□□□□ 0.62
SHANK1Q9Y566 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 AC069544.1-201ENST00000609399 999 ntBASIC18.92■□□□□ 0.62
SHANK1Q9Y566 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 AC079834.2-201ENST00000609776 1949 ntBASIC18.92■□□□□ 0.62
SHANK1Q9Y566 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.92■□□□□ 0.62
SHANK1Q9Y566 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 PNMA6B-201ENST00000538162 1200 ntBASIC18.91■□□□□ 0.62
SHANK1Q9Y566 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.91■□□□□ 0.62
SHANK1Q9Y566 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 AC233263.1-201ENST00000578059 224 ntBASIC18.9■□□□□ 0.62
SHANK1Q9Y566 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHANK1Q9Y566 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SHANK1Q9Y566 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SHANK1Q9Y566 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.89■□□□□ 0.62
SHANK1Q9Y566 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SHANK1Q9Y566 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SHANK1Q9Y566 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.62
SHANK1Q9Y566 LINC01023-201ENST00000606054 436 ntBASIC18.89■□□□□ 0.62
SHANK1Q9Y566 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHANK1Q9Y566 LINC00565-201ENST00000562710 2331 ntBASIC18.88■□□□□ 0.61
SHANK1Q9Y566 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHANK1Q9Y566 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms