Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS35Q96QK1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS35Q96QK1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS35Q96QK1 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS35Q96QK1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS35Q96QK1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 AC080038.1-201ENST00000611274 1154 ntBASIC20.7■□□□□ 0.9
VPS35Q96QK1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS35Q96QK1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS35Q96QK1 RBM17P2-201ENST00000616397 1405 ntBASIC20.7■□□□□ 0.9
VPS35Q96QK1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.69■□□□□ 0.9
VPS35Q96QK1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 DUX4L16-201ENST00000555130 1264 ntBASIC20.69■□□□□ 0.9
VPS35Q96QK1 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS35Q96QK1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS35Q96QK1 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 AL024507.2-201ENST00000606070 2574 ntBASIC20.68■□□□□ 0.9
VPS35Q96QK1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 AC245052.3-201ENST00000450182 901 ntBASIC20.68■□□□□ 0.9
VPS35Q96QK1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 TERF1P5-201ENST00000477545 1207 ntBASIC20.68■□□□□ 0.9
VPS35Q96QK1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 RARRES2P11-201ENST00000635158 484 ntBASIC20.68■□□□□ 0.9
VPS35Q96QK1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS35Q96QK1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS35Q96QK1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.67■□□□□ 0.9
VPS35Q96QK1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 AC007322.4-201ENST00000509611 723 ntBASIC20.67■□□□□ 0.9
VPS35Q96QK1 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 AC013268.1-206ENST00000638368 961 ntBASIC20.67■□□□□ 0.9
VPS35Q96QK1 AC112229.1-201ENST00000639295 961 ntBASIC20.67■□□□□ 0.9
VPS35Q96QK1 AC073111.5-205ENST00000641717 521 ntBASIC20.67■□□□□ 0.9
VPS35Q96QK1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS35Q96QK1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS35Q96QK1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS35Q96QK1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS35Q96QK1 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS35Q96QK1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS35Q96QK1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS35Q96QK1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS35Q96QK1 AC231657.2-201ENST00000624556 255 ntBASIC20.66■□□□□ 0.9
VPS35Q96QK1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS35Q96QK1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS35Q96QK1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS35Q96QK1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS35Q96QK1 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS35Q96QK1 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS35Q96QK1 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms