Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 AC133552.2-202ENST00000575694 574 ntBASIC22.34■■□□□ 1.17
ZNF560Q96MR9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.34■■□□□ 1.17
ZNF560Q96MR9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
ZNF560Q96MR9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
ZNF560Q96MR9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.33■■□□□ 1.17
ZNF560Q96MR9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.33■■□□□ 1.17
ZNF560Q96MR9 AF201337.1-201ENST00000520239 748 ntBASIC22.33■■□□□ 1.17
ZNF560Q96MR9 AL109923.1-201ENST00000618799 583 ntBASIC22.33■■□□□ 1.17
ZNF560Q96MR9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
ZNF560Q96MR9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
ZNF560Q96MR9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
ZNF560Q96MR9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
ZNF560Q96MR9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
ZNF560Q96MR9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 CDV3P1-201ENST00000471403 739 ntBASIC22.32■■□□□ 1.16
ZNF560Q96MR9 AC104771.1-201ENST00000603335 964 ntBASIC22.32■■□□□ 1.16
ZNF560Q96MR9 OR10C1-204ENST00000622521 1039 ntBASIC22.32■■□□□ 1.16
ZNF560Q96MR9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
ZNF560Q96MR9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 Z98882.1-201ENST00000622160 2253 ntBASIC22.31■■□□□ 1.16
ZNF560Q96MR9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 AC083906.2-201ENST00000511578 360 ntBASIC22.31■■□□□ 1.16
ZNF560Q96MR9 AC105036.2-201ENST00000569468 176 ntBASIC22.31■■□□□ 1.16
ZNF560Q96MR9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 AC079834.2-201ENST00000609776 1949 ntBASIC22.31■■□□□ 1.16
ZNF560Q96MR9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.31■■□□□ 1.16
ZNF560Q96MR9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
ZNF560Q96MR9 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
ZNF560Q96MR9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 SLC29A4P1-201ENST00000398760 971 ntBASIC22.28■■□□□ 1.16
ZNF560Q96MR9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 RARRES2P4-201ENST00000514074 484 ntBASIC22.28■■□□□ 1.16
ZNF560Q96MR9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC22.28■■□□□ 1.16
ZNF560Q96MR9 AC016405.3-201ENST00000607710 860 ntBASIC22.28■■□□□ 1.16
ZNF560Q96MR9 FAM21FP-204ENST00000608637 956 ntBASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms