Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
RFX7Q2KHR2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RFX7Q2KHR2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC25.36■■□□□ 1.65
RFX7Q2KHR2 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC25.36■■□□□ 1.65
RFX7Q2KHR2 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RFX7Q2KHR2 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 DYM-203ENST00000442713 2147 ntTSL 2 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
RFX7Q2KHR2 FEM1AP4-201ENST00000443167 1987 ntBASIC25.35■■□□□ 1.65
RFX7Q2KHR2 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
RFX7Q2KHR2 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RFX7Q2KHR2 AC068338.2-201ENST00000563278 1430 ntBASIC25.34■■□□□ 1.65
RFX7Q2KHR2 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RFX7Q2KHR2 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RFX7Q2KHR2 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RFX7Q2KHR2 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RFX7Q2KHR2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 MARS-234ENST00000630571 216 ntTSL 5 BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 MARS-235ENST00000630803 183 ntTSL 3 BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
RFX7Q2KHR2 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
RFX7Q2KHR2 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
RFX7Q2KHR2 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
RFX7Q2KHR2 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 TERF1P5-201ENST00000477545 1207 ntBASIC25.32■■□□□ 1.64
RFX7Q2KHR2 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RFX7Q2KHR2 AC069152.1-201ENST00000438030 544 ntBASIC25.31■■□□□ 1.64
RFX7Q2KHR2 AF201337.1-201ENST00000520239 748 ntBASIC25.31■■□□□ 1.64
RFX7Q2KHR2 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 KLF13-207ENST00000560473 489 ntTSL 3 BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 AL024507.2-201ENST00000606070 2574 ntBASIC25.31■■□□□ 1.64
RFX7Q2KHR2 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
RFX7Q2KHR2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 AC073210.2-201ENST00000430369 194 ntBASIC25.3■■□□□ 1.64
RFX7Q2KHR2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC25.3■■□□□ 1.64
RFX7Q2KHR2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 SLC29A4P1-201ENST00000398760 971 ntBASIC25.29■■□□□ 1.64
RFX7Q2KHR2 CD99P1-205ENST00000527459 561 ntBASIC25.29■■□□□ 1.64
RFX7Q2KHR2 KRT18P6-201ENST00000555540 1265 ntBASIC25.29■■□□□ 1.64
RFX7Q2KHR2 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.29■■□□□ 1.64
RFX7Q2KHR2 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 AC105036.2-201ENST00000569468 176 ntBASIC25.28■■□□□ 1.64
RFX7Q2KHR2 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RFX7Q2KHR2 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RFX7Q2KHR2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms