Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.66■□□□□ 0.58
H3F3AP84243 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.66■□□□□ 0.58
H3F3AP84243 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
H3F3AP84243 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.66■□□□□ 0.58
H3F3AP84243 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
H3F3AP84243 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
H3F3AP84243 AL049796.1-201ENST00000565336 1766 ntBASIC18.65■□□□□ 0.58
H3F3AP84243 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.65■□□□□ 0.58
H3F3AP84243 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
H3F3AP84243 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.65■□□□□ 0.58
H3F3AP84243 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.65■□□□□ 0.58
H3F3AP84243 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.65■□□□□ 0.58
H3F3AP84243 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
H3F3AP84243 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.65■□□□□ 0.58
H3F3AP84243 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.65■□□□□ 0.58
H3F3AP84243 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.65■□□□□ 0.58
H3F3AP84243 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.65■□□□□ 0.58
H3F3AP84243 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.65■□□□□ 0.58
H3F3AP84243 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.65■□□□□ 0.58
H3F3AP84243 AC092437.1-201ENST00000624794 1048 ntBASIC18.65■□□□□ 0.58
H3F3AP84243 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
H3F3AP84243 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
H3F3AP84243 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
H3F3AP84243 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
H3F3AP84243 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
H3F3AP84243 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
H3F3AP84243 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
H3F3AP84243 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
H3F3AP84243 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
H3F3AP84243 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
H3F3AP84243 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
H3F3AP84243 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
H3F3AP84243 AC016769.1-201ENST00000409132 1010 ntBASIC18.64■□□□□ 0.57
H3F3AP84243 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.64■□□□□ 0.57
H3F3AP84243 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
H3F3AP84243 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
H3F3AP84243 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
H3F3AP84243 AC243732.1-201ENST00000612648 864 ntBASIC18.64■□□□□ 0.57
H3F3AP84243 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.64■□□□□ 0.57
H3F3AP84243 RARRES2P11-201ENST00000635158 484 ntBASIC18.64■□□□□ 0.57
H3F3AP84243 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.64■□□□□ 0.57
H3F3AP84243 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.64■□□□□ 0.57
H3F3AP84243 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.64■□□□□ 0.57
H3F3AP84243 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.64■□□□□ 0.57
H3F3AP84243 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
H3F3AP84243 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
H3F3AP84243 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.63■□□□□ 0.57
H3F3AP84243 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.63■□□□□ 0.57
H3F3AP84243 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.63■□□□□ 0.57
H3F3AP84243 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
H3F3AP84243 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.63■□□□□ 0.57
H3F3AP84243 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.63■□□□□ 0.57
H3F3AP84243 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 RBM17P2-201ENST00000616397 1405 ntBASIC18.63■□□□□ 0.57
H3F3AP84243 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.63■□□□□ 0.57
H3F3AP84243 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.63■□□□□ 0.57
H3F3AP84243 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
H3F3AP84243 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
H3F3AP84243 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.62■□□□□ 0.57
H3F3AP84243 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
H3F3AP84243 AF106564.1-201ENST00000607058 2553 ntBASIC18.62■□□□□ 0.57
H3F3AP84243 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.62■□□□□ 0.57
H3F3AP84243 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.62■□□□□ 0.57
H3F3AP84243 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
H3F3AP84243 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
H3F3AP84243 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
H3F3AP84243 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
H3F3AP84243 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
H3F3AP84243 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.61■□□□□ 0.57
H3F3AP84243 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
H3F3AP84243 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
H3F3AP84243 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
H3F3AP84243 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
H3F3AP84243 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
H3F3AP84243 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.61■□□□□ 0.57
H3F3AP84243 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.61■□□□□ 0.57
H3F3AP84243 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
H3F3AP84243 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
H3F3AP84243 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
H3F3AP84243 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.61■□□□□ 0.57
H3F3AP84243 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms