Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 RNF165-205ENST00000588679 2904 ntBASIC20.38■□□□□ 0.85
PKNOX1P55347 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PKNOX1P55347 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
PKNOX1P55347 EDA-201ENST00000338901 1233 ntBASIC20.38■□□□□ 0.85
PKNOX1P55347 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.38■□□□□ 0.85
PKNOX1P55347 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.38■□□□□ 0.85
PKNOX1P55347 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.38■□□□□ 0.85
PKNOX1P55347 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.38■□□□□ 0.85
PKNOX1P55347 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.38■□□□□ 0.85
PKNOX1P55347 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PKNOX1P55347 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PKNOX1P55347 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.38■□□□□ 0.85
PKNOX1P55347 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PKNOX1P55347 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PKNOX1P55347 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.37■□□□□ 0.85
PKNOX1P55347 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.37■□□□□ 0.85
PKNOX1P55347 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.37■□□□□ 0.85
PKNOX1P55347 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PKNOX1P55347 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PKNOX1P55347 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PKNOX1P55347 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
PKNOX1P55347 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.37■□□□□ 0.85
PKNOX1P55347 BX005040.4-201ENST00000637145 1518 ntBASIC20.37■□□□□ 0.85
PKNOX1P55347 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PKNOX1P55347 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.37■□□□□ 0.85
PKNOX1P55347 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PKNOX1P55347 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PKNOX1P55347 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.36■□□□□ 0.85
PKNOX1P55347 AP001330.3-201ENST00000520123 633 ntBASIC20.36■□□□□ 0.85
PKNOX1P55347 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PKNOX1P55347 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PKNOX1P55347 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.36■□□□□ 0.85
PKNOX1P55347 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PKNOX1P55347 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
PKNOX1P55347 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.35■□□□□ 0.85
PKNOX1P55347 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
PKNOX1P55347 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.35■□□□□ 0.85
PKNOX1P55347 MIR572-201ENST00000384983 95 ntBASIC20.35■□□□□ 0.85
PKNOX1P55347 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.35■□□□□ 0.85
PKNOX1P55347 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PKNOX1P55347 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PKNOX1P55347 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PKNOX1P55347 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
PKNOX1P55347 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PKNOX1P55347 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PKNOX1P55347 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.34■□□□□ 0.85
PKNOX1P55347 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.34■□□□□ 0.85
PKNOX1P55347 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PKNOX1P55347 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PKNOX1P55347 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.34■□□□□ 0.85
PKNOX1P55347 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.34■□□□□ 0.85
PKNOX1P55347 AL355001.2-201ENST00000620617 1191 ntBASIC20.34■□□□□ 0.85
PKNOX1P55347 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PKNOX1P55347 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.34■□□□□ 0.85
PKNOX1P55347 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.34■□□□□ 0.85
PKNOX1P55347 RASA4CP-201ENST00000424092 1398 ntBASIC20.34■□□□□ 0.85
PKNOX1P55347 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PKNOX1P55347 AC007952.6-201ENST00000573168 2673 ntBASIC20.33■□□□□ 0.85
PKNOX1P55347 AC003957.1-201ENST00000625108 2673 ntBASIC20.33■□□□□ 0.85
PKNOX1P55347 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PKNOX1P55347 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms