Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.75■■□□□ 1.07
LIG3P49916 AC123595.1-201ENST00000440769 1046 ntBASIC21.75■■□□□ 1.07
LIG3P49916 SMUG1P1-201ENST00000590640 811 ntBASIC21.75■■□□□ 1.07
LIG3P49916 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
LIG3P49916 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.75■■□□□ 1.07
LIG3P49916 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LIG3P49916 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIG3P49916 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIG3P49916 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.74■■□□□ 1.07
LIG3P49916 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.74■■□□□ 1.07
LIG3P49916 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIG3P49916 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIG3P49916 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIG3P49916 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.74■■□□□ 1.07
LIG3P49916 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.74■■□□□ 1.07
LIG3P49916 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.74■■□□□ 1.07
LIG3P49916 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
LIG3P49916 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIG3P49916 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.74■■□□□ 1.07
LIG3P49916 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.74■■□□□ 1.07
LIG3P49916 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIG3P49916 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
LIG3P49916 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.74■■□□□ 1.07
LIG3P49916 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
LIG3P49916 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.74■■□□□ 1.07
LIG3P49916 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.73■■□□□ 1.07
LIG3P49916 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.73■■□□□ 1.07
LIG3P49916 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIG3P49916 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIG3P49916 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.73■■□□□ 1.07
LIG3P49916 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.73■■□□□ 1.07
LIG3P49916 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.73■■□□□ 1.07
LIG3P49916 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
LIG3P49916 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIG3P49916 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIG3P49916 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LIG3P49916 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.72■■□□□ 1.07
LIG3P49916 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.72■■□□□ 1.07
LIG3P49916 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
LIG3P49916 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
LIG3P49916 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
LIG3P49916 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.72■■□□□ 1.07
LIG3P49916 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.72■■□□□ 1.07
LIG3P49916 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
LIG3P49916 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.72■■□□□ 1.07
LIG3P49916 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIG3P49916 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.71■■□□□ 1.07
LIG3P49916 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
LIG3P49916 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.71■■□□□ 1.07
LIG3P49916 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.71■■□□□ 1.07
LIG3P49916 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
LIG3P49916 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIG3P49916 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIG3P49916 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.7■■□□□ 1.06
LIG3P49916 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIG3P49916 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIG3P49916 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
LIG3P49916 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIG3P49916 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.7■■□□□ 1.06
LIG3P49916 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIG3P49916 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.7■■□□□ 1.06
LIG3P49916 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIG3P49916 LINC02228-203ENST00000641970 1355 ntBASIC21.7■■□□□ 1.06
LIG3P49916 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIG3P49916 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
LIG3P49916 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.69■■□□□ 1.06
LIG3P49916 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIG3P49916 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms