Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.26■□□□□ 0.51
COL8A1P27658 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 PRKY-204ENST00000533551 1019 ntBASIC18.26■□□□□ 0.51
COL8A1P27658 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.26■□□□□ 0.51
COL8A1P27658 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL8A1P27658 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.26■□□□□ 0.51
COL8A1P27658 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
COL8A1P27658 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL8A1P27658 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL8A1P27658 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.25■□□□□ 0.51
COL8A1P27658 OR7E47P-201ENST00000546390 1422 ntBASIC18.25■□□□□ 0.51
COL8A1P27658 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.25■□□□□ 0.51
COL8A1P27658 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL8A1P27658 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL8A1P27658 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL8A1P27658 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.25■□□□□ 0.51
COL8A1P27658 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.25■□□□□ 0.51
COL8A1P27658 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
COL8A1P27658 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL8A1P27658 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL8A1P27658 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL8A1P27658 AC138932.3-201ENST00000567634 1902 ntBASIC18.25■□□□□ 0.51
COL8A1P27658 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL8A1P27658 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.24■□□□□ 0.51
COL8A1P27658 KRT16P2-201ENST00000414673 1423 ntBASIC18.24■□□□□ 0.51
COL8A1P27658 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL8A1P27658 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.24■□□□□ 0.51
COL8A1P27658 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL8A1P27658 POM121L13P-201ENST00000422362 380 ntBASIC18.24■□□□□ 0.51
COL8A1P27658 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.24■□□□□ 0.51
COL8A1P27658 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.24■□□□□ 0.51
COL8A1P27658 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.24■□□□□ 0.51
COL8A1P27658 AC113410.3-201ENST00000623366 203 ntBASIC18.24■□□□□ 0.51
COL8A1P27658 AL023875.1-201ENST00000640777 796 ntBASIC18.24■□□□□ 0.51
COL8A1P27658 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.24■□□□□ 0.51
COL8A1P27658 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.24■□□□□ 0.51
COL8A1P27658 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.24■□□□□ 0.51
COL8A1P27658 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL8A1P27658 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL8A1P27658 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.23■□□□□ 0.51
COL8A1P27658 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
COL8A1P27658 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL8A1P27658 AC243732.1-201ENST00000612648 864 ntBASIC18.23■□□□□ 0.51
COL8A1P27658 AL590326.2-201ENST00000625139 305 ntBASIC18.23■□□□□ 0.51
COL8A1P27658 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.23■□□□□ 0.51
COL8A1P27658 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
COL8A1P27658 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.23■□□□□ 0.51
COL8A1P27658 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL8A1P27658 AL139125.2-201ENST00000623134 1869 ntBASIC18.22■□□□□ 0.51
COL8A1P27658 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL8A1P27658 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.22■□□□□ 0.51
COL8A1P27658 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.22■□□□□ 0.51
COL8A1P27658 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.22■□□□□ 0.51
COL8A1P27658 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
COL8A1P27658 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL8A1P27658 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.22■□□□□ 0.51
COL8A1P27658 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
COL8A1P27658 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.22■□□□□ 0.51
COL8A1P27658 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.22■□□□□ 0.51
COL8A1P27658 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL8A1P27658 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 AC061975.6-201ENST00000579045 1553 ntBASIC18.21■□□□□ 0.51
COL8A1P27658 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL8A1P27658 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.21■□□□□ 0.51
COL8A1P27658 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms