Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OR2A1-AS1-207ENST00000486094 819 ntBASIC26.61■■□□□ 1.85
COL5A3P25940 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.61■■□□□ 1.85
COL5A3P25940 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC26.61■■□□□ 1.85
COL5A3P25940 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
COL5A3P25940 AC087633.2-202ENST00000565166 1439 ntBASIC26.61■■□□□ 1.85
COL5A3P25940 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC26.6■■□□□ 1.85
COL5A3P25940 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.6■■□□□ 1.85
COL5A3P25940 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL5A3P25940 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL5A3P25940 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
COL5A3P25940 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
COL5A3P25940 PKM-204ENST00000449901 2526 ntTSL 2 BASIC26.6■■□□□ 1.85
COL5A3P25940 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
COL5A3P25940 AC127496.7-201ENST00000625110 1798 ntBASIC26.6■■□□□ 1.85
COL5A3P25940 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.6■■□□□ 1.85
COL5A3P25940 GXYLT1P3-201ENST00000453058 1193 ntBASIC26.59■■□□□ 1.85
COL5A3P25940 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC26.59■■□□□ 1.85
COL5A3P25940 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC26.59■■□□□ 1.85
COL5A3P25940 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC26.59■■□□□ 1.85
COL5A3P25940 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26.59■■□□□ 1.85
COL5A3P25940 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL5A3P25940 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
COL5A3P25940 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC26.59■■□□□ 1.85
COL5A3P25940 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC26.59■■□□□ 1.85
COL5A3P25940 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.59■■□□□ 1.85
COL5A3P25940 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC26.59■■□□□ 1.85
COL5A3P25940 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
COL5A3P25940 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL5A3P25940 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC26.58■■□□□ 1.85
COL5A3P25940 FAM99A-202ENST00000538190 1989 ntBASIC26.58■■□□□ 1.85
COL5A3P25940 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
COL5A3P25940 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
COL5A3P25940 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC26.58■■□□□ 1.85
COL5A3P25940 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC26.58■■□□□ 1.85
COL5A3P25940 AC010542.4-201ENST00000563151 1910 ntBASIC26.57■■□□□ 1.84
COL5A3P25940 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
COL5A3P25940 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
COL5A3P25940 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL5A3P25940 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL5A3P25940 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
COL5A3P25940 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC26.57■■□□□ 1.84
COL5A3P25940 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC26.57■■□□□ 1.84
COL5A3P25940 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.57■■□□□ 1.84
COL5A3P25940 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC26.57■■□□□ 1.84
COL5A3P25940 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
COL5A3P25940 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
COL5A3P25940 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
COL5A3P25940 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 AC092053.2-201ENST00000640557 1818 ntBASIC26.56■■□□□ 1.84
COL5A3P25940 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC26.56■■□□□ 1.84
COL5A3P25940 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC26.56■■□□□ 1.84
COL5A3P25940 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
COL5A3P25940 NARF-205ENST00000412079 1760 ntTSL 5 BASIC26.56■■□□□ 1.84
COL5A3P25940 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC26.56■■□□□ 1.84
COL5A3P25940 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL5A3P25940 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC26.55■■□□□ 1.84
COL5A3P25940 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL5A3P25940 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL5A3P25940 ECEL1P3-201ENST00000427961 737 ntBASIC26.55■■□□□ 1.84
COL5A3P25940 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC26.55■■□□□ 1.84
COL5A3P25940 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
COL5A3P25940 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC26.55■■□□□ 1.84
COL5A3P25940 Z99916.2-201ENST00000604037 246 ntBASIC26.55■■□□□ 1.84
COL5A3P25940 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
COL5A3P25940 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC26.55■■□□□ 1.84
COL5A3P25940 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
COL5A3P25940 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC26.54■■□□□ 1.84
COL5A3P25940 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC26.54■■□□□ 1.84
COL5A3P25940 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 ISG20-202ENST00000379224 540 ntTSL 3 BASIC26.54■■□□□ 1.84
COL5A3P25940 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC26.54■■□□□ 1.84
COL5A3P25940 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
COL5A3P25940 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
COL5A3P25940 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
COL5A3P25940 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.53■■□□□ 1.84
COL5A3P25940 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC26.53■■□□□ 1.84
COL5A3P25940 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC26.53■■□□□ 1.84
COL5A3P25940 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
COL5A3P25940 CRK-204ENST00000574295 1391 ntTSL 5 BASIC26.53■■□□□ 1.84
COL5A3P25940 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms