Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC097658.1-201ENST00000475555 843 ntBASIC21.76■■□□□ 1.07
HMGA1P17096 RNA5SP413-201ENST00000516373 109 ntBASIC21.76■■□□□ 1.07
HMGA1P17096 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.76■■□□□ 1.07
HMGA1P17096 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGA1P17096 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.76■■□□□ 1.07
HMGA1P17096 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGA1P17096 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HMGA1P17096 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.75■■□□□ 1.07
HMGA1P17096 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.75■■□□□ 1.07
HMGA1P17096 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.75■■□□□ 1.07
HMGA1P17096 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.75■■□□□ 1.07
HMGA1P17096 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
HMGA1P17096 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.75■■□□□ 1.07
HMGA1P17096 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.75■■□□□ 1.07
HMGA1P17096 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGA1P17096 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGA1P17096 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGA1P17096 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
HMGA1P17096 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGA1P17096 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGA1P17096 CYP2T3P-201ENST00000601990 817 ntBASIC21.74■■□□□ 1.07
HMGA1P17096 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
HMGA1P17096 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGA1P17096 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGA1P17096 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGA1P17096 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
HMGA1P17096 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.73■■□□□ 1.07
HMGA1P17096 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGA1P17096 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGA1P17096 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HMGA1P17096 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.73■■□□□ 1.07
HMGA1P17096 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.73■■□□□ 1.07
HMGA1P17096 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HMGA1P17096 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGA1P17096 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGA1P17096 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HMGA1P17096 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGA1P17096 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.72■■□□□ 1.07
HMGA1P17096 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HMGA1P17096 LSM12P1-201ENST00000411836 588 ntBASIC21.72■■□□□ 1.07
HMGA1P17096 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGA1P17096 AC007322.3-201ENST00000426526 701 ntBASIC21.72■■□□□ 1.07
HMGA1P17096 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
HMGA1P17096 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.72■■□□□ 1.07
HMGA1P17096 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGA1P17096 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGA1P17096 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGA1P17096 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGA1P17096 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGA1P17096 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGA1P17096 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGA1P17096 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGA1P17096 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HMGA1P17096 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
HMGA1P17096 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGA1P17096 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGA1P17096 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HMGA1P17096 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 POU5F1P3-201ENST00000428824 1078 ntBASIC21.71■■□□□ 1.07
HMGA1P17096 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGA1P17096 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGA1P17096 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGA1P17096 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGA1P17096 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
HMGA1P17096 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
HMGA1P17096 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.7■■□□□ 1.07
HMGA1P17096 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
HMGA1P17096 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGA1P17096 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGA1P17096 MCRIP2P1-201ENST00000394346 511 ntBASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms