Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.84■■□□□ 1.09
VCANP13611 CYP2D8P-201ENST00000433633 1490 ntBASIC21.83■■□□□ 1.09
VCANP13611 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VCANP13611 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
VCANP13611 AC004263.2-201ENST00000617183 678 ntBASIC21.83■■□□□ 1.09
VCANP13611 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VCANP13611 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
VCANP13611 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCANP13611 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCANP13611 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCANP13611 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCANP13611 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.83■■□□□ 1.08
VCANP13611 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VCANP13611 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCANP13611 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.82■■□□□ 1.08
VCANP13611 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VCANP13611 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VCANP13611 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
VCANP13611 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VCANP13611 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.82■■□□□ 1.08
VCANP13611 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.82■■□□□ 1.08
VCANP13611 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
VCANP13611 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VCANP13611 KRT18P22-201ENST00000402024 1347 ntBASIC21.82■■□□□ 1.08
VCANP13611 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VCANP13611 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.81■■□□□ 1.08
VCANP13611 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.81■■□□□ 1.08
VCANP13611 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.81■■□□□ 1.08
VCANP13611 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.81■■□□□ 1.08
VCANP13611 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
VCANP13611 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCANP13611 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
VCANP13611 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VCANP13611 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VCANP13611 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.81■■□□□ 1.08
VCANP13611 AC006011.2-201ENST00000621313 1158 ntBASIC21.81■■□□□ 1.08
VCANP13611 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
VCANP13611 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VCANP13611 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.81■■□□□ 1.08
VCANP13611 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
VCANP13611 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
VCANP13611 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.81■■□□□ 1.08
VCANP13611 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VCANP13611 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
VCANP13611 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.8■■□□□ 1.08
VCANP13611 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
VCANP13611 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.8■■□□□ 1.08
VCANP13611 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
VCANP13611 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCANP13611 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VCANP13611 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.8■■□□□ 1.08
VCANP13611 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VCANP13611 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.8■■□□□ 1.08
VCANP13611 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.8■■□□□ 1.08
VCANP13611 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.79■■□□□ 1.08
VCANP13611 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.79■■□□□ 1.08
VCANP13611 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCANP13611 AC023511.2-201ENST00000618803 211 ntBASIC21.79■■□□□ 1.08
VCANP13611 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCANP13611 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VCANP13611 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.79■■□□□ 1.08
VCANP13611 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.79■■□□□ 1.08
VCANP13611 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.79■■□□□ 1.08
VCANP13611 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCANP13611 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.79■■□□□ 1.08
VCANP13611 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VCANP13611 AP000347.1-202ENST00000435868 847 ntBASIC21.79■■□□□ 1.08
VCANP13611 AC104076.2-201ENST00000448912 469 ntBASIC21.79■■□□□ 1.08
VCANP13611 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
VCANP13611 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.78■■□□□ 1.08
VCANP13611 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
VCANP13611 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.78■■□□□ 1.08
VCANP13611 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.78■■□□□ 1.08
VCANP13611 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 DUSP8P4-201ENST00000399538 1761 ntBASIC21.78■■□□□ 1.08
VCANP13611 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.78■■□□□ 1.08
VCANP13611 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.78■■□□□ 1.08
VCANP13611 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCANP13611 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.78■■□□□ 1.08
VCANP13611 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.78■■□□□ 1.08
VCANP13611 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VCANP13611 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VCANP13611 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.77■■□□□ 1.08
VCANP13611 AP006587.3-201ENST00000525742 1516 ntBASIC21.77■■□□□ 1.08
VCANP13611 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VCANP13611 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VCANP13611 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VCANP13611 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms