Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIMS3P0CW19 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LIMS3P0CW19 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.53■□□□□ 0.56
LIMS3P0CW19 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LIMS3P0CW19 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
LIMS3P0CW19 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.53■□□□□ 0.56
LIMS3P0CW19 SRD5A1P1-201ENST00000442297 786 ntBASIC18.53■□□□□ 0.56
LIMS3P0CW19 MIR3621-201ENST00000580529 85 ntBASIC18.53■□□□□ 0.56
LIMS3P0CW19 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.53■□□□□ 0.56
LIMS3P0CW19 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.53■□□□□ 0.56
LIMS3P0CW19 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIMS3P0CW19 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.52■□□□□ 0.56
LIMS3P0CW19 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.52■□□□□ 0.56
LIMS3P0CW19 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LIMS3P0CW19 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 SLC47A1P1-202ENST00000449666 945 ntBASIC18.52■□□□□ 0.56
LIMS3P0CW19 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.52■□□□□ 0.56
LIMS3P0CW19 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
LIMS3P0CW19 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.52■□□□□ 0.56
LIMS3P0CW19 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMS3P0CW19 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LIMS3P0CW19 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMS3P0CW19 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.52■□□□□ 0.55
LIMS3P0CW19 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.51■□□□□ 0.55
LIMS3P0CW19 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMS3P0CW19 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMS3P0CW19 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMS3P0CW19 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.51■□□□□ 0.55
LIMS3P0CW19 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMS3P0CW19 AC099778.1-201ENST00000568593 1911 ntBASIC18.51■□□□□ 0.55
LIMS3P0CW19 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.51■□□□□ 0.55
LIMS3P0CW19 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMS3P0CW19 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMS3P0CW19 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
LIMS3P0CW19 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
LIMS3P0CW19 SERBP1P1-201ENST00000396021 1160 ntBASIC18.5■□□□□ 0.55
LIMS3P0CW19 AL138724.1-201ENST00000606771 1088 ntBASIC18.5■□□□□ 0.55
LIMS3P0CW19 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LIMS3P0CW19 FP700111.2-201ENST00000619190 1892 ntBASIC18.5■□□□□ 0.55
LIMS3P0CW19 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMS3P0CW19 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.49■□□□□ 0.55
LIMS3P0CW19 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMS3P0CW19 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMS3P0CW19 SMUG1P1-201ENST00000590640 811 ntBASIC18.49■□□□□ 0.55
LIMS3P0CW19 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMS3P0CW19 AL512631.2-201ENST00000604634 923 ntBASIC18.49■□□□□ 0.55
LIMS3P0CW19 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMS3P0CW19 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMS3P0CW19 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LIMS3P0CW19 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
LIMS3P0CW19 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIMS3P0CW19 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms