Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 AC244015.2-201ENST00000616358 1861 ntBASIC20.44■□□□□ 0.86
HOXC4P09017 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
HOXC4P09017 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC4P09017 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC4P09017 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC4P09017 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
HOXC4P09017 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.44■□□□□ 0.86
HOXC4P09017 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC4P09017 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC4P09017 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HOXC4P09017 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC4P09017 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC4P09017 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
HOXC4P09017 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HOXC4P09017 MCRIP2P1-201ENST00000394346 511 ntBASIC20.43■□□□□ 0.86
HOXC4P09017 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC4P09017 CD99P1-205ENST00000527459 561 ntBASIC20.43■□□□□ 0.86
HOXC4P09017 AC098934.4-201ENST00000564127 592 ntBASIC20.43■□□□□ 0.86
HOXC4P09017 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.43■□□□□ 0.86
HOXC4P09017 MYC-209ENST00000641252 345 ntBASIC20.43■□□□□ 0.86
HOXC4P09017 AC116050.2-201ENST00000612102 1779 ntBASIC20.43■□□□□ 0.86
HOXC4P09017 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC4P09017 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC4P09017 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC4P09017 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC4P09017 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
HOXC4P09017 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HOXC4P09017 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
HOXC4P09017 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.42■□□□□ 0.86
HOXC4P09017 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.42■□□□□ 0.86
HOXC4P09017 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.42■□□□□ 0.86
HOXC4P09017 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HOXC4P09017 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.42■□□□□ 0.86
HOXC4P09017 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.42■□□□□ 0.86
HOXC4P09017 CYP2T3P-201ENST00000601990 817 ntBASIC20.42■□□□□ 0.86
HOXC4P09017 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
HOXC4P09017 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
HOXC4P09017 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
HOXC4P09017 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HOXC4P09017 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.41■□□□□ 0.86
HOXC4P09017 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.41■□□□□ 0.86
HOXC4P09017 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC4P09017 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HOXC4P09017 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC4P09017 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.41■□□□□ 0.86
HOXC4P09017 AC097658.1-201ENST00000475555 843 ntBASIC20.41■□□□□ 0.86
HOXC4P09017 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC4P09017 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.41■□□□□ 0.86
HOXC4P09017 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.41■□□□□ 0.86
HOXC4P09017 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HOXC4P09017 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC4P09017 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC4P09017 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC4P09017 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC4P09017 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
HOXC4P09017 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
HOXC4P09017 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.4■□□□□ 0.86
HOXC4P09017 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HOXC4P09017 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.4■□□□□ 0.86
HOXC4P09017 AC091874.3-201ENST00000512672 1195 ntBASIC20.4■□□□□ 0.86
HOXC4P09017 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.4■□□□□ 0.86
HOXC4P09017 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HOXC4P09017 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.4■□□□□ 0.86
HOXC4P09017 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HOXC4P09017 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HOXC4P09017 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
HOXC4P09017 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HOXC4P09017 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HOXC4P09017 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.39■□□□□ 0.86
HOXC4P09017 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.39■□□□□ 0.85
HOXC4P09017 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.39■□□□□ 0.85
HOXC4P09017 LSM12P1-201ENST00000411836 588 ntBASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms