Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC31.72■■■□□ 2.67
RAPGEF3O95398 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC31.72■■■□□ 2.67
RAPGEF3O95398 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC31.72■■■□□ 2.67
RAPGEF3O95398 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
RAPGEF3O95398 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
RAPGEF3O95398 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC31.72■■■□□ 2.67
RAPGEF3O95398 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
RAPGEF3O95398 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC31.71■■■□□ 2.67
RAPGEF3O95398 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
RAPGEF3O95398 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC31.71■■■□□ 2.67
RAPGEF3O95398 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC31.71■■■□□ 2.67
RAPGEF3O95398 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC31.71■■■□□ 2.67
RAPGEF3O95398 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC31.71■■■□□ 2.67
RAPGEF3O95398 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
RAPGEF3O95398 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC31.71■■■□□ 2.67
RAPGEF3O95398 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC31.7■■■□□ 2.67
RAPGEF3O95398 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
RAPGEF3O95398 PENK-204ENST00000518770 863 ntTSL 2 BASIC31.7■■■□□ 2.67
RAPGEF3O95398 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.67
RAPGEF3O95398 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC31.7■■■□□ 2.67
RAPGEF3O95398 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
RAPGEF3O95398 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC31.7■■■□□ 2.66
RAPGEF3O95398 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.66
RAPGEF3O95398 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
RAPGEF3O95398 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC31.7■■■□□ 2.66
RAPGEF3O95398 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 NXN-202ENST00000537628 1340 ntTSL 3 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
RAPGEF3O95398 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC31.69■■■□□ 2.66
RAPGEF3O95398 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
RAPGEF3O95398 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
RAPGEF3O95398 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
RAPGEF3O95398 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
RAPGEF3O95398 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
RAPGEF3O95398 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC31.68■■■□□ 2.66
RAPGEF3O95398 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 AC137767.1-201ENST00000602918 1920 ntBASIC31.67■■■□□ 2.66
RAPGEF3O95398 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC31.67■■■□□ 2.66
RAPGEF3O95398 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
RAPGEF3O95398 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC31.67■■■□□ 2.66
RAPGEF3O95398 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC31.67■■■□□ 2.66
RAPGEF3O95398 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
RAPGEF3O95398 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
RAPGEF3O95398 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC31.67■■■□□ 2.66
RAPGEF3O95398 AL135905.2-201ENST00000584934 1404 ntBASIC31.66■■■□□ 2.66
RAPGEF3O95398 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
RAPGEF3O95398 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
RAPGEF3O95398 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
RAPGEF3O95398 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
RAPGEF3O95398 AC239809.2-201ENST00000415381 517 ntBASIC31.66■■■□□ 2.66
RAPGEF3O95398 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
RAPGEF3O95398 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
RAPGEF3O95398 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
RAPGEF3O95398 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC31.66■■■□□ 2.66
RAPGEF3O95398 AC020928.2-201ENST00000588717 2197 ntBASIC31.66■■■□□ 2.66
RAPGEF3O95398 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC31.65■■■□□ 2.66
RAPGEF3O95398 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC31.65■■■□□ 2.66
RAPGEF3O95398 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
RAPGEF3O95398 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC31.65■■■□□ 2.66
RAPGEF3O95398 PRKY-204ENST00000533551 1019 ntBASIC31.65■■■□□ 2.66
RAPGEF3O95398 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC31.65■■■□□ 2.66
RAPGEF3O95398 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC31.65■■■□□ 2.66
RAPGEF3O95398 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC31.65■■■□□ 2.66
RAPGEF3O95398 AC110285.5-201ENST00000611501 352 ntBASIC31.65■■■□□ 2.66
RAPGEF3O95398 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RAPGEF3O95398 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RAPGEF3O95398 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RAPGEF3O95398 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
RAPGEF3O95398 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RAPGEF3O95398 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
RAPGEF3O95398 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC31.63■■■□□ 2.65
RAPGEF3O95398 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RAPGEF3O95398 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
RAPGEF3O95398 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms