Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
RTN3O95197 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RTN3O95197 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
RTN3O95197 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.96■■□□□ 1.11
RTN3O95197 AL162412.1-201ENST00000567129 965 ntBASIC21.96■■□□□ 1.11
RTN3O95197 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
RTN3O95197 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTN3O95197 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
RTN3O95197 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.95■■□□□ 1.11
RTN3O95197 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTN3O95197 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.95■■□□□ 1.1
RTN3O95197 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTN3O95197 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.95■■□□□ 1.1
RTN3O95197 CYP2T1P-201ENST00000432607 1285 ntBASIC21.95■■□□□ 1.1
RTN3O95197 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
RTN3O95197 AF201337.1-201ENST00000520239 748 ntBASIC21.95■■□□□ 1.1
RTN3O95197 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.95■■□□□ 1.1
RTN3O95197 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.95■■□□□ 1.1
RTN3O95197 AL591742.1-201ENST00000604433 565 ntBASIC21.95■■□□□ 1.1
RTN3O95197 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.95■■□□□ 1.1
RTN3O95197 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTN3O95197 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTN3O95197 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTN3O95197 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.95■■□□□ 1.1
RTN3O95197 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
RTN3O95197 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.94■■□□□ 1.1
RTN3O95197 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.94■■□□□ 1.1
RTN3O95197 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.94■■□□□ 1.1
RTN3O95197 AC069236.1-201ENST00000604339 616 ntBASIC21.94■■□□□ 1.1
RTN3O95197 AC008694.1-202ENST00000636953 945 ntBASIC21.94■■□□□ 1.1
RTN3O95197 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.94■■□□□ 1.1
RTN3O95197 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.94■■□□□ 1.1
RTN3O95197 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
RTN3O95197 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
RTN3O95197 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTN3O95197 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.93■■□□□ 1.1
RTN3O95197 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.93■■□□□ 1.1
RTN3O95197 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.93■■□□□ 1.1
RTN3O95197 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.93■■□□□ 1.1
RTN3O95197 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
RTN3O95197 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.93■■□□□ 1.1
RTN3O95197 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.93■■□□□ 1.1
RTN3O95197 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
RTN3O95197 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.93■■□□□ 1.1
RTN3O95197 OR10C1-204ENST00000622521 1039 ntBASIC21.93■■□□□ 1.1
RTN3O95197 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.93■■□□□ 1.1
RTN3O95197 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.93■■□□□ 1.1
RTN3O95197 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTN3O95197 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTN3O95197 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTN3O95197 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
RTN3O95197 SLC29A4P1-201ENST00000398760 971 ntBASIC21.92■■□□□ 1.1
RTN3O95197 TSPY6P-201ENST00000448518 926 ntBASIC21.92■■□□□ 1.1
RTN3O95197 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.92■■□□□ 1.1
RTN3O95197 AC105036.2-201ENST00000569468 176 ntBASIC21.92■■□□□ 1.1
RTN3O95197 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
RTN3O95197 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTN3O95197 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTN3O95197 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTN3O95197 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTN3O95197 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTN3O95197 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTN3O95197 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.91■■□□□ 1.1
RTN3O95197 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.91■■□□□ 1.1
RTN3O95197 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTN3O95197 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTN3O95197 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.91■■□□□ 1.1
RTN3O95197 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTN3O95197 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTN3O95197 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.91■■□□□ 1.1
RTN3O95197 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.91■■□□□ 1.1
RTN3O95197 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.91■■□□□ 1.1
RTN3O95197 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms