Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HMGB3O15347 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
HMGB3O15347 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB3O15347 DUX4L4-201ENST00000566884 1269 ntBASIC16.77■□□□□ 0.28
HMGB3O15347 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.77■□□□□ 0.27
HMGB3O15347 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB3O15347 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
HMGB3O15347 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB3O15347 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HMGB3O15347 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.77■□□□□ 0.27
HMGB3O15347 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
HMGB3O15347 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HMGB3O15347 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HMGB3O15347 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HMGB3O15347 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGB3O15347 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
HMGB3O15347 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HMGB3O15347 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB3O15347 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGB3O15347 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB3O15347 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HMGB3O15347 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HMGB3O15347 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB3O15347 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC16.75■□□□□ 0.27
HMGB3O15347 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGB3O15347 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGB3O15347 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB3O15347 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB3O15347 AFG3L1P-217ENST00000557444 2447 ntBASIC16.75■□□□□ 0.27
HMGB3O15347 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGB3O15347 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB3O15347 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGB3O15347 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HMGB3O15347 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
HMGB3O15347 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB3O15347 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB3O15347 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB3O15347 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB3O15347 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
HMGB3O15347 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB3O15347 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC16.74■□□□□ 0.27
HMGB3O15347 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB3O15347 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB3O15347 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB3O15347 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
HMGB3O15347 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB3O15347 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HMGB3O15347 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGB3O15347 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HMGB3O15347 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HMGB3O15347 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
HMGB3O15347 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HMGB3O15347 IDNK-201ENST00000376417 511 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGB3O15347 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms