Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.31■□□□□ 0.84
CDX4O14627 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CDX4O14627 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CDX4O14627 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.3■□□□□ 0.84
CDX4O14627 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.3■□□□□ 0.84
CDX4O14627 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.3■□□□□ 0.84
CDX4O14627 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CDX4O14627 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.3■□□□□ 0.84
CDX4O14627 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CDX4O14627 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CDX4O14627 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDX4O14627 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
CDX4O14627 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.29■□□□□ 0.84
CDX4O14627 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.29■□□□□ 0.84
CDX4O14627 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.29■□□□□ 0.84
CDX4O14627 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.29■□□□□ 0.84
CDX4O14627 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.29■□□□□ 0.84
CDX4O14627 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.29■□□□□ 0.84
CDX4O14627 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.29■□□□□ 0.84
CDX4O14627 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
CDX4O14627 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.29■□□□□ 0.84
CDX4O14627 AC124016.1-201ENST00000609552 612 ntBASIC20.29■□□□□ 0.84
CDX4O14627 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDX4O14627 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.28■□□□□ 0.84
CDX4O14627 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.28■□□□□ 0.84
CDX4O14627 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.28■□□□□ 0.84
CDX4O14627 AC133681.1-201ENST00000465482 601 ntBASIC20.28■□□□□ 0.84
CDX4O14627 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.28■□□□□ 0.84
CDX4O14627 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.28■□□□□ 0.84
CDX4O14627 AP001412.1-201ENST00000608405 714 ntBASIC20.28■□□□□ 0.84
CDX4O14627 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.28■□□□□ 0.84
CDX4O14627 AC139530.1-201ENST00000575312 1977 ntBASIC20.28■□□□□ 0.84
CDX4O14627 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDX4O14627 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.27■□□□□ 0.84
CDX4O14627 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.27■□□□□ 0.84
CDX4O14627 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CDX4O14627 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.27■□□□□ 0.84
CDX4O14627 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CDX4O14627 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CDX4O14627 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.27■□□□□ 0.84
CDX4O14627 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.27■□□□□ 0.84
CDX4O14627 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDX4O14627 MIR4785-201ENST00000585005 73 ntBASIC20.27■□□□□ 0.84
CDX4O14627 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CDX4O14627 AL023875.1-201ENST00000640777 796 ntBASIC20.27■□□□□ 0.84
CDX4O14627 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
CDX4O14627 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CDX4O14627 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.27■□□□□ 0.83
CDX4O14627 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CDX4O14627 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.26■□□□□ 0.83
CDX4O14627 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CDX4O14627 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.26■□□□□ 0.83
CDX4O14627 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CDX4O14627 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms