Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL6A5A8TX70 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL6A5A8TX70 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
COL6A5A8TX70 AL450487.1-201ENST00000426799 995 ntBASIC16.43■□□□□ 0.22
COL6A5A8TX70 AL355355.2-201ENST00000442321 338 ntBASIC16.43■□□□□ 0.22
COL6A5A8TX70 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.43■□□□□ 0.22
COL6A5A8TX70 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 AC120498.8-201ENST00000614275 531 ntBASIC16.43■□□□□ 0.22
COL6A5A8TX70 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A5A8TX70 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A5A8TX70 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A5A8TX70 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.42■□□□□ 0.22
COL6A5A8TX70 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL6A5A8TX70 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
COL6A5A8TX70 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.42■□□□□ 0.22
COL6A5A8TX70 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A5A8TX70 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 AF186192.3-201ENST00000583427 947 ntBASIC16.41■□□□□ 0.22
COL6A5A8TX70 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A5A8TX70 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL6A5A8TX70 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A5A8TX70 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A5A8TX70 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 SLC25A3P1-201ENST00000443844 931 ntBASIC16.4■□□□□ 0.22
COL6A5A8TX70 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 RBM17P1-201ENST00000453646 1190 ntBASIC16.4■□□□□ 0.22
COL6A5A8TX70 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 AL034346.1-201ENST00000568244 1277 ntBASIC16.4■□□□□ 0.22
COL6A5A8TX70 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A5A8TX70 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A5A8TX70 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A5A8TX70 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A5A8TX70 MCRIP2P1-201ENST00000394346 511 ntBASIC16.4■□□□□ 0.22
COL6A5A8TX70 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL6A5A8TX70 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 BX664615.1-201ENST00000443558 458 ntBASIC16.39■□□□□ 0.21
COL6A5A8TX70 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 RARG-204ENST00000543726 1779 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms