Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA1Q9Y5H4 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHGA1Q9Y5H4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHGA1Q9Y5H4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
PCDHGA1Q9Y5H4 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHGA1Q9Y5H4 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 MCRIP2P1-201ENST00000394346 511 ntBASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 AC245052.3-201ENST00000450182 901 ntBASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 RN7SL471P-201ENST00000580476 299 ntBASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHGA1Q9Y5H4 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 C1QBPP2-201ENST00000528754 825 ntBASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHGA1Q9Y5H4 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PCDHGA1Q9Y5H4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 AC092368.3-202ENST00000574180 1591 ntBASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHGA1Q9Y5H4 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 AC133561.1-201ENST00000568600 2415 ntBASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 AC087742.1-201ENST00000575880 1738 ntBASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHGA1Q9Y5H4 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHGA1Q9Y5H4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms