Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 AP006587.3-201ENST00000525742 1516 ntBASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA3Q9Y5H0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA3Q9Y5H0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PCDHGA3Q9Y5H0 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 AC068338.2-201ENST00000563278 1430 ntBASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA3Q9Y5H0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 MIR4758-201ENST00000577688 71 ntBASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDHGA3Q9Y5H0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 OR10C1-204ENST00000622521 1039 ntBASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms