Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 SLC7A5P2-201ENST00000553010 536 ntBASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.78■□□□□ 0.76
ATG4BQ9Y4P1 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4BQ9Y4P1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.77■□□□□ 0.75
ATG4BQ9Y4P1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
ATG4BQ9Y4P1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4BQ9Y4P1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 KRT16P2-201ENST00000414673 1423 ntBASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
ATG4BQ9Y4P1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 KRT18P20-201ENST00000548986 1279 ntBASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 AC120498.10-201ENST00000621827 505 ntBASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4BQ9Y4P1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms