Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC026185.1-201ENST00000445748 174 ntBASIC19.85■□□□□ 0.77
SCN3AQ9NY46 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.85■□□□□ 0.77
SCN3AQ9NY46 AC120498.10-201ENST00000621827 505 ntBASIC19.85■□□□□ 0.77
SCN3AQ9NY46 RARRES2P11-201ENST00000635158 484 ntBASIC19.85■□□□□ 0.77
SCN3AQ9NY46 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.84■□□□□ 0.77
SCN3AQ9NY46 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 MIR663A-201ENST00000385250 93 ntBASIC19.83■□□□□ 0.77
SCN3AQ9NY46 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 CDCA4P2-201ENST00000441182 718 ntBASIC19.83■□□□□ 0.77
SCN3AQ9NY46 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SCN3AQ9NY46 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 AC073111.5-205ENST00000641717 521 ntBASIC19.83■□□□□ 0.76
SCN3AQ9NY46 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SCN3AQ9NY46 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 AL137060.1-201ENST00000618151 2648 ntBASIC19.82■□□□□ 0.76
SCN3AQ9NY46 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 RAP2CP1-201ENST00000605103 478 ntBASIC19.82■□□□□ 0.76
SCN3AQ9NY46 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SCN3AQ9NY46 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 AC013268.1-206ENST00000638368 961 ntBASIC19.81■□□□□ 0.76
SCN3AQ9NY46 AC112229.1-201ENST00000639295 961 ntBASIC19.81■□□□□ 0.76
SCN3AQ9NY46 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 RBM17P2-201ENST00000616397 1405 ntBASIC19.81■□□□□ 0.76
SCN3AQ9NY46 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN3AQ9NY46 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.8■□□□□ 0.76
SCN3AQ9NY46 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 AC011767.1-201ENST00000617410 1153 ntBASIC19.8■□□□□ 0.76
SCN3AQ9NY46 AC010536.3-201ENST00000620306 533 ntBASIC19.8■□□□□ 0.76
SCN3AQ9NY46 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.8■□□□□ 0.76
SCN3AQ9NY46 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN3AQ9NY46 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms