Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NDE1Q9NXR1 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NDE1Q9NXR1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NDE1Q9NXR1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NDE1Q9NXR1 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
NDE1Q9NXR1 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 TSPY13P-201ENST00000338964 914 ntBASIC20.19■□□□□ 0.82
NDE1Q9NXR1 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 HSD17B1P1-201ENST00000590052 955 ntBASIC20.19■□□□□ 0.82
NDE1Q9NXR1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NDE1Q9NXR1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 BX664725.1-201ENST00000438252 379 ntBASIC20.18■□□□□ 0.82
NDE1Q9NXR1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
NDE1Q9NXR1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 AC241377.3-202ENST00000626088 1088 ntBASIC20.17■□□□□ 0.82
NDE1Q9NXR1 AC241585.3-202ENST00000628937 1088 ntBASIC20.17■□□□□ 0.82
NDE1Q9NXR1 AC245100.8-202ENST00000629247 1058 ntBASIC20.17■□□□□ 0.82
NDE1Q9NXR1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 AC133637.1-201ENST00000624115 1537 ntBASIC20.17■□□□□ 0.82
NDE1Q9NXR1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
NDE1Q9NXR1 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NDE1Q9NXR1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 AC103834.1-201ENST00000520383 144 ntBASIC20.15■□□□□ 0.82
NDE1Q9NXR1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 AC003102.1-202ENST00000563394 1796 ntBASIC20.15■□□□□ 0.82
NDE1Q9NXR1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NDE1Q9NXR1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
NDE1Q9NXR1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
NDE1Q9NXR1 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.14■□□□□ 0.82
NDE1Q9NXR1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.14■□□□□ 0.82
NDE1Q9NXR1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.14■□□□□ 0.81
NDE1Q9NXR1 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NDE1Q9NXR1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
NDE1Q9NXR1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.14■□□□□ 0.81
NDE1Q9NXR1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.14■□□□□ 0.81
NDE1Q9NXR1 AL031848.2-201ENST00000607670 837 ntBASIC20.14■□□□□ 0.81
NDE1Q9NXR1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NDE1Q9NXR1 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms