Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.63■■□□□ 1.05
HPS4Q9NQG7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HPS4Q9NQG7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
HPS4Q9NQG7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.63■■□□□ 1.05
HPS4Q9NQG7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.63■■□□□ 1.05
HPS4Q9NQG7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HPS4Q9NQG7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 AC092053.2-201ENST00000640557 1818 ntBASIC21.61■■□□□ 1.05
HPS4Q9NQG7 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.61■■□□□ 1.05
HPS4Q9NQG7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 AC091874.3-201ENST00000512672 1195 ntBASIC21.6■■□□□ 1.05
HPS4Q9NQG7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HPS4Q9NQG7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 PRORSD1P-201ENST00000295112 541 ntBASIC21.59■■□□□ 1.05
HPS4Q9NQG7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 AC097658.1-201ENST00000475555 843 ntBASIC21.59■■□□□ 1.05
HPS4Q9NQG7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HPS4Q9NQG7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 KRT18P29-201ENST00000397031 1267 ntBASIC21.58■■□□□ 1.05
HPS4Q9NQG7 DUSP5P2-201ENST00000426873 1033 ntBASIC21.58■■□□□ 1.05
HPS4Q9NQG7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HPS4Q9NQG7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
HPS4Q9NQG7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HPS4Q9NQG7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.58■■□□□ 1.04
HPS4Q9NQG7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
HPS4Q9NQG7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
HPS4Q9NQG7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HPS4Q9NQG7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.57■■□□□ 1.04
HPS4Q9NQG7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
HPS4Q9NQG7 AC026471.6-201ENST00000622954 1905 ntBASIC21.57■■□□□ 1.04
HPS4Q9NQG7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HPS4Q9NQG7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HPS4Q9NQG7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HPS4Q9NQG7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HPS4Q9NQG7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms