Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 FAM99A-202ENST00000538190 1989 ntBASIC12.38□□□□□ -0.43
LIMD2Q9BT23 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LIMD2Q9BT23 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 PEMT-206ENST00000435340 960 ntTSL 5 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 RALB-208ENST00000631312 311 ntTSL 5 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 GOLGA2P6-201ENST00000340929 2049 ntBASIC12.37□□□□□ -0.43
LIMD2Q9BT23 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LIMD2Q9BT23 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 IGHV3-19-201ENST00000521488 291 ntBASIC12.36□□□□□ -0.43
LIMD2Q9BT23 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 AC024257.2-201ENST00000549699 147 ntBASIC12.36□□□□□ -0.43
LIMD2Q9BT23 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 HR-201ENST00000312841 5351 ntTSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
LIMD2Q9BT23 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms