Protein–RNA interactions for Protein: Q9BSQ5

CCM2, Cerebral cavernous malformations 2 protein, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2Q9BSQ5 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCM2Q9BSQ5 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 AC092437.1-201ENST00000624794 1048 ntBASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 MYCNOS-205ENST00000641950 531 ntBASIC20.58■□□□□ 0.89
CCM2Q9BSQ5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCM2Q9BSQ5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.58■□□□□ 0.88
CCM2Q9BSQ5 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.57■□□□□ 0.88
CCM2Q9BSQ5 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 BID-214ENST00000617586 542 ntTSL 5 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCM2Q9BSQ5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 AC007375.3-201ENST00000600936 2314 ntBASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 AC004911.1-201ENST00000416316 871 ntBASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCM2Q9BSQ5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.54■□□□□ 0.88
CCM2Q9BSQ5 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCM2Q9BSQ5 AC026310.3-201ENST00000625186 2373 ntBASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms