Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL12A1Q99715 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.49■□□□□ 0.55
COL12A1Q99715 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
COL12A1Q99715 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL12A1Q99715 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL12A1Q99715 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.48■□□□□ 0.55
COL12A1Q99715 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL12A1Q99715 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL12A1Q99715 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL12A1Q99715 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL12A1Q99715 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.48■□□□□ 0.55
COL12A1Q99715 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL12A1Q99715 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.48■□□□□ 0.55
COL12A1Q99715 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.48■□□□□ 0.55
COL12A1Q99715 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL12A1Q99715 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL12A1Q99715 CRYGFP-201ENST00000418459 633 ntBASIC18.48■□□□□ 0.55
COL12A1Q99715 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.48■□□□□ 0.55
COL12A1Q99715 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.48■□□□□ 0.55
COL12A1Q99715 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.48■□□□□ 0.55
COL12A1Q99715 KRT16P2-201ENST00000414673 1423 ntBASIC18.48■□□□□ 0.55
COL12A1Q99715 AC073508.3-201ENST00000619697 1419 ntBASIC18.48■□□□□ 0.55
COL12A1Q99715 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.47■□□□□ 0.55
COL12A1Q99715 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.47■□□□□ 0.55
COL12A1Q99715 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.47■□□□□ 0.55
COL12A1Q99715 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.47■□□□□ 0.55
COL12A1Q99715 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.47■□□□□ 0.55
COL12A1Q99715 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.47■□□□□ 0.55
COL12A1Q99715 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.47■□□□□ 0.55
COL12A1Q99715 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 AC005521.1-201ENST00000393351 872 ntBASIC18.47■□□□□ 0.55
COL12A1Q99715 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.47■□□□□ 0.55
COL12A1Q99715 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
COL12A1Q99715 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.47■□□□□ 0.55
COL12A1Q99715 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.47■□□□□ 0.55
COL12A1Q99715 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.47■□□□□ 0.55
COL12A1Q99715 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL12A1Q99715 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL12A1Q99715 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.46■□□□□ 0.55
COL12A1Q99715 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.46■□□□□ 0.55
COL12A1Q99715 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL12A1Q99715 KRT8P9-201ENST00000558927 1449 ntBASIC18.46■□□□□ 0.55
COL12A1Q99715 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL12A1Q99715 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL12A1Q99715 AC239809.2-201ENST00000415381 517 ntBASIC18.46■□□□□ 0.55
COL12A1Q99715 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.46■□□□□ 0.55
COL12A1Q99715 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL12A1Q99715 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
COL12A1Q99715 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL12A1Q99715 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.46■□□□□ 0.54
COL12A1Q99715 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.46■□□□□ 0.54
COL12A1Q99715 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.46■□□□□ 0.54
COL12A1Q99715 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.46■□□□□ 0.54
COL12A1Q99715 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL12A1Q99715 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL12A1Q99715 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.45■□□□□ 0.54
COL12A1Q99715 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL12A1Q99715 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.45■□□□□ 0.54
COL12A1Q99715 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.45■□□□□ 0.54
COL12A1Q99715 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.45■□□□□ 0.54
COL12A1Q99715 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.45■□□□□ 0.54
COL12A1Q99715 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL12A1Q99715 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.45■□□□□ 0.54
COL12A1Q99715 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL12A1Q99715 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
COL12A1Q99715 AP006587.3-201ENST00000525742 1516 ntBASIC18.45■□□□□ 0.54
COL12A1Q99715 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.45■□□□□ 0.54
COL12A1Q99715 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL12A1Q99715 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL12A1Q99715 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.45■□□□□ 0.54
COL12A1Q99715 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.45■□□□□ 0.54
COL12A1Q99715 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.45■□□□□ 0.54
COL12A1Q99715 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.45■□□□□ 0.54
COL12A1Q99715 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.44■□□□□ 0.54
COL12A1Q99715 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.44■□□□□ 0.54
COL12A1Q99715 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.44■□□□□ 0.54
COL12A1Q99715 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
COL12A1Q99715 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
COL12A1Q99715 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.44■□□□□ 0.54
COL12A1Q99715 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.44■□□□□ 0.54
COL12A1Q99715 AC026471.5-201ENST00000615068 467 ntBASIC18.44■□□□□ 0.54
COL12A1Q99715 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.44■□□□□ 0.54
COL12A1Q99715 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.44■□□□□ 0.54
COL12A1Q99715 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.44■□□□□ 0.54
COL12A1Q99715 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL12A1Q99715 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms