Protein–RNA interactions for Protein: Q8N9Z2

CCDC71L, Coiled-coil domain-containing protein 71L, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC71LQ8N9Z2 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC71LQ8N9Z2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 AC239859.2-201ENST00000444165 318 ntBASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 AK3-203ENST00000447596 705 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 AC099791.2-201ENST00000605725 427 ntBASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 HCG11-201ENST00000411553 5696 ntBASIC17.36■□□□□ 0.37
CCDC71LQ8N9Z2 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC71LQ8N9Z2 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 MIR3181-201ENST00000578512 73 ntBASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC71LQ8N9Z2 AC073314.1-201ENST00000568729 2216 ntBASIC17.33■□□□□ 0.37
CCDC71LQ8N9Z2 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CCDC71LQ8N9Z2 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC71LQ8N9Z2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC71LQ8N9Z2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC71LQ8N9Z2 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC71LQ8N9Z2 AC092171.4-201ENST00000609130 632 ntBASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC71LQ8N9Z2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC71LQ8N9Z2 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms