Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC005224.4-201ENST00000583262 1652 ntBASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 ITM2C-210ENST00000620962 501 ntBASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SH3RF1Q7Z6J0 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC24.02■■□□□ 1.44
SH3RF1Q7Z6J0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
SH3RF1Q7Z6J0 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SH3RF1Q7Z6J0 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.02■■□□□ 1.44
SH3RF1Q7Z6J0 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC24.02■■□□□ 1.44
SH3RF1Q7Z6J0 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SH3RF1Q7Z6J0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
SH3RF1Q7Z6J0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 PRORSD1P-201ENST00000295112 541 ntBASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SH3RF1Q7Z6J0 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 KRT18P29-201ENST00000397031 1267 ntBASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SH3RF1Q7Z6J0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 AC133552.2-202ENST00000575694 574 ntBASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 AP001160.3-201ENST00000601484 763 ntBASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
SH3RF1Q7Z6J0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 RNA5SP413-201ENST00000516373 109 ntBASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SH3RF1Q7Z6J0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 RPS2P52-201ENST00000469610 820 ntBASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 AC005229.4-201ENST00000610085 2198 ntBASIC23.97■■□□□ 1.43
SH3RF1Q7Z6J0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 PXK-203ENST00000383715 1756 ntTSL 5 BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SH3RF1Q7Z6J0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms