Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PPP4R4Q6NUP7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PPP4R4Q6NUP7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 AC104564.3-201ENST00000582367 638 ntBASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 AC011298.3-201ENST00000615796 283 ntBASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 AC026471.6-201ENST00000622954 1905 ntBASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PPP4R4Q6NUP7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 GABARAPL3-202ENST00000624044 1851 ntBASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 AC008764.7-201ENST00000593779 1081 ntBASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 AL138724.1-201ENST00000606771 1088 ntBASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.93■□□□□ 0.78
PPP4R4Q6NUP7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 AL355001.2-201ENST00000620617 1191 ntBASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 AC133637.1-201ENST00000624115 1537 ntBASIC19.92■□□□□ 0.78
PPP4R4Q6NUP7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 AC004687.1-201ENST00000579003 1625 ntBASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 AF213884.3-201ENST00000563833 479 ntBASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 AC136469.2-201ENST00000623944 1028 ntBASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PPP4R4Q6NUP7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 EDA-201ENST00000338901 1233 ntBASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms