Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.22■■□□□ 1.47
KRT40Q6A162 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
KRT40Q6A162 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
KRT40Q6A162 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
KRT40Q6A162 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
KRT40Q6A162 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
KRT40Q6A162 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
KRT40Q6A162 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
KRT40Q6A162 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC24.21■■□□□ 1.47
KRT40Q6A162 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC24.21■■□□□ 1.47
KRT40Q6A162 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
KRT40Q6A162 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
KRT40Q6A162 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
KRT40Q6A162 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
KRT40Q6A162 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
KRT40Q6A162 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.2■■□□□ 1.46
KRT40Q6A162 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.2■■□□□ 1.46
KRT40Q6A162 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.2■■□□□ 1.46
KRT40Q6A162 AC080038.1-201ENST00000611274 1154 ntBASIC24.2■■□□□ 1.46
KRT40Q6A162 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC24.2■■□□□ 1.46
KRT40Q6A162 AC061975.6-201ENST00000579045 1553 ntBASIC24.2■■□□□ 1.46
KRT40Q6A162 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
KRT40Q6A162 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.19■■□□□ 1.46
KRT40Q6A162 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
KRT40Q6A162 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
KRT40Q6A162 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
KRT40Q6A162 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
KRT40Q6A162 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
KRT40Q6A162 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.19■■□□□ 1.46
KRT40Q6A162 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.19■■□□□ 1.46
KRT40Q6A162 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.19■■□□□ 1.46
KRT40Q6A162 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.19■■□□□ 1.46
KRT40Q6A162 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC24.19■■□□□ 1.46
KRT40Q6A162 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
KRT40Q6A162 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
KRT40Q6A162 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
KRT40Q6A162 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
KRT40Q6A162 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.18■■□□□ 1.46
KRT40Q6A162 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
KRT40Q6A162 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
KRT40Q6A162 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
KRT40Q6A162 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.18■■□□□ 1.46
KRT40Q6A162 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
KRT40Q6A162 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.17■■□□□ 1.46
KRT40Q6A162 SERP1-208ENST00000491660 830 ntTSL 2 BASIC24.17■■□□□ 1.46
KRT40Q6A162 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.17■■□□□ 1.46
KRT40Q6A162 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
KRT40Q6A162 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
KRT40Q6A162 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
KRT40Q6A162 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
KRT40Q6A162 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC24.17■■□□□ 1.46
KRT40Q6A162 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.16■■□□□ 1.46
KRT40Q6A162 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC24.16■■□□□ 1.46
KRT40Q6A162 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
KRT40Q6A162 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
KRT40Q6A162 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.16■■□□□ 1.46
KRT40Q6A162 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.16■■□□□ 1.46
KRT40Q6A162 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC24.16■■□□□ 1.46
KRT40Q6A162 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.16■■□□□ 1.46
KRT40Q6A162 RAP2CP1-201ENST00000605103 478 ntBASIC24.16■■□□□ 1.46
KRT40Q6A162 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
KRT40Q6A162 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
KRT40Q6A162 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
KRT40Q6A162 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.15■■□□□ 1.46
KRT40Q6A162 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC24.15■■□□□ 1.46
KRT40Q6A162 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
KRT40Q6A162 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
KRT40Q6A162 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
KRT40Q6A162 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.14■■□□□ 1.46
KRT40Q6A162 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.14■■□□□ 1.45
KRT40Q6A162 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.14■■□□□ 1.45
KRT40Q6A162 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.14■■□□□ 1.45
KRT40Q6A162 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC24.14■■□□□ 1.45
KRT40Q6A162 AC138907.5-202ENST00000569484 235 ntBASIC24.14■■□□□ 1.45
KRT40Q6A162 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.14■■□□□ 1.45
KRT40Q6A162 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
KRT40Q6A162 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms