Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.34■□□□□ 0.53
LSM6P62312 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM6P62312 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.34■□□□□ 0.53
LSM6P62312 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LSM6P62312 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
LSM6P62312 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM6P62312 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
LSM6P62312 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM6P62312 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM6P62312 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.33■□□□□ 0.53
LSM6P62312 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM6P62312 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM6P62312 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LSM6P62312 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.33■□□□□ 0.52
LSM6P62312 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.33■□□□□ 0.52
LSM6P62312 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LSM6P62312 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.33■□□□□ 0.52
LSM6P62312 AC120498.10-201ENST00000621827 505 ntBASIC18.33■□□□□ 0.52
LSM6P62312 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.33■□□□□ 0.52
LSM6P62312 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LSM6P62312 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM6P62312 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM6P62312 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.33■□□□□ 0.52
LSM6P62312 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LSM6P62312 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 KRT16P2-201ENST00000414673 1423 ntBASIC18.32■□□□□ 0.52
LSM6P62312 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM6P62312 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.32■□□□□ 0.52
LSM6P62312 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.32■□□□□ 0.52
LSM6P62312 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LSM6P62312 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM6P62312 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.32■□□□□ 0.52
LSM6P62312 AC010141.2-201ENST00000452426 721 ntBASIC18.32■□□□□ 0.52
LSM6P62312 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM6P62312 DUX4L2-201ENST00000561772 1275 ntBASIC18.32■□□□□ 0.52
LSM6P62312 CCDC92B-201ENST00000575506 885 ntBASIC18.32■□□□□ 0.52
LSM6P62312 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
LSM6P62312 DUX4L6-201ENST00000626483 1275 ntBASIC18.32■□□□□ 0.52
LSM6P62312 DUX4L1-201ENST00000627662 1275 ntBASIC18.32■□□□□ 0.52
LSM6P62312 DUX4L8-201ENST00000629013 1275 ntBASIC18.32■□□□□ 0.52
LSM6P62312 DUX4L3-201ENST00000630187 1275 ntBASIC18.32■□□□□ 0.52
LSM6P62312 DUX4L7-201ENST00000630678 1275 ntBASIC18.32■□□□□ 0.52
LSM6P62312 DUX4L5-201ENST00000630834 1275 ntBASIC18.32■□□□□ 0.52
LSM6P62312 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 RNF165-205ENST00000588679 2904 ntBASIC18.32■□□□□ 0.52
LSM6P62312 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LSM6P62312 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM6P62312 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
LSM6P62312 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.31■□□□□ 0.52
LSM6P62312 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM6P62312 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM6P62312 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.31■□□□□ 0.52
LSM6P62312 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM6P62312 KRT18P14-201ENST00000534205 1250 ntBASIC18.31■□□□□ 0.52
LSM6P62312 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.31■□□□□ 0.52
LSM6P62312 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM6P62312 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.31■□□□□ 0.52
LSM6P62312 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM6P62312 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM6P62312 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM6P62312 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LSM6P62312 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.3■□□□□ 0.52
LSM6P62312 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.3■□□□□ 0.52
LSM6P62312 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.3■□□□□ 0.52
LSM6P62312 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LSM6P62312 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM6P62312 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM6P62312 AC121338.2-201ENST00000622535 1744 ntBASIC18.29■□□□□ 0.52
LSM6P62312 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.29■□□□□ 0.52
LSM6P62312 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms