Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.86■□□□□ 0.77
LIM2P55344 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIM2P55344 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIM2P55344 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIM2P55344 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.85■□□□□ 0.77
LIM2P55344 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIM2P55344 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.85■□□□□ 0.77
LIM2P55344 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.85■□□□□ 0.77
LIM2P55344 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIM2P55344 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
LIM2P55344 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
LIM2P55344 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIM2P55344 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIM2P55344 AF106564.1-201ENST00000607058 2553 ntBASIC19.85■□□□□ 0.77
LIM2P55344 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIM2P55344 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
LIM2P55344 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
LIM2P55344 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.84■□□□□ 0.77
LIM2P55344 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.84■□□□□ 0.77
LIM2P55344 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIM2P55344 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.83■□□□□ 0.77
LIM2P55344 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.83■□□□□ 0.77
LIM2P55344 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIM2P55344 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.83■□□□□ 0.77
LIM2P55344 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIM2P55344 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LIM2P55344 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.83■□□□□ 0.77
LIM2P55344 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.83■□□□□ 0.77
LIM2P55344 KRT18P20-201ENST00000548986 1279 ntBASIC19.83■□□□□ 0.77
LIM2P55344 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.83■□□□□ 0.77
LIM2P55344 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.83■□□□□ 0.77
LIM2P55344 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIM2P55344 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIM2P55344 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.83■□□□□ 0.76
LIM2P55344 FEM1AP4-201ENST00000443167 1987 ntBASIC19.83■□□□□ 0.76
LIM2P55344 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIM2P55344 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LIM2P55344 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIM2P55344 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LIM2P55344 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.82■□□□□ 0.76
LIM2P55344 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LIM2P55344 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.82■□□□□ 0.76
LIM2P55344 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.82■□□□□ 0.76
LIM2P55344 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.82■□□□□ 0.76
LIM2P55344 SLC7A5P2-201ENST00000553010 536 ntBASIC19.82■□□□□ 0.76
LIM2P55344 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIM2P55344 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.82■□□□□ 0.76
LIM2P55344 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIM2P55344 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIM2P55344 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIM2P55344 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.81■□□□□ 0.76
LIM2P55344 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.81■□□□□ 0.76
LIM2P55344 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.81■□□□□ 0.76
LIM2P55344 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.81■□□□□ 0.76
LIM2P55344 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.81■□□□□ 0.76
LIM2P55344 AC120498.10-201ENST00000621827 505 ntBASIC19.81■□□□□ 0.76
LIM2P55344 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.81■□□□□ 0.76
LIM2P55344 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
LIM2P55344 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
LIM2P55344 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIM2P55344 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.81■□□□□ 0.76
LIM2P55344 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.8■□□□□ 0.76
LIM2P55344 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LIM2P55344 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIM2P55344 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.8■□□□□ 0.76
LIM2P55344 AC137761.2-201ENST00000561729 223 ntBASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms