Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.24■□□□□ 0.35
HOXA1P49639 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 AK3-203ENST00000447596 705 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXA1P49639 RARRES2P1-201ENST00000474487 481 ntBASIC17.24■□□□□ 0.35
HOXA1P49639 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HOXA1P49639 MIR6724-1-201ENST00000616420 92 ntBASIC17.24■□□□□ 0.35
HOXA1P49639 MIR6724-2-201ENST00000616483 92 ntBASIC17.24■□□□□ 0.35
HOXA1P49639 MIR6724-4-201ENST00000617390 92 ntBASIC17.24■□□□□ 0.35
HOXA1P49639 MIR6724-3-201ENST00000622482 92 ntBASIC17.24■□□□□ 0.35
HOXA1P49639 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HOXA1P49639 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA1P49639 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HOXA1P49639 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HOXA1P49639 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXA1P49639 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXA1P49639 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXA1P49639 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HOXA1P49639 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 AC133637.1-201ENST00000624115 1537 ntBASIC17.23■□□□□ 0.35
HOXA1P49639 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXA1P49639 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HOXA1P49639 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 AC009299.2-201ENST00000482477 511 ntBASIC17.23■□□□□ 0.35
HOXA1P49639 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXA1P49639 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXA1P49639 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXA1P49639 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HOXA1P49639 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXA1P49639 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA1P49639 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
HOXA1P49639 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HOXA1P49639 OR7E47P-201ENST00000546390 1422 ntBASIC17.22■□□□□ 0.35
HOXA1P49639 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HOXA1P49639 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HOXA1P49639 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HOXA1P49639 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.22■□□□□ 0.35
HOXA1P49639 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXA1P49639 AC079089.2-201ENST00000531211 1277 ntBASIC17.22■□□□□ 0.35
HOXA1P49639 pRNA.6-201ENST00000610482 90 ntBASIC17.22■□□□□ 0.35
HOXA1P49639 pRNA.5-201ENST00000612139 90 ntBASIC17.22■□□□□ 0.35
HOXA1P49639 pRNA.11-201ENST00000618423 90 ntBASIC17.22■□□□□ 0.35
HOXA1P49639 pRNA.13-201ENST00000619112 90 ntBASIC17.22■□□□□ 0.35
HOXA1P49639 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA1P49639 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HOXA1P49639 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HOXA1P49639 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HOXA1P49639 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
HOXA1P49639 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXA1P49639 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HOXA1P49639 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 AC104564.3-201ENST00000582367 638 ntBASIC17.21■□□□□ 0.35
HOXA1P49639 AL451085.2-201ENST00000605085 799 ntBASIC17.21■□□□□ 0.35
HOXA1P49639 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC17.21■□□□□ 0.35
HOXA1P49639 AL031602.1-201ENST00000633169 911 ntBASIC17.21■□□□□ 0.35
HOXA1P49639 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXA1P49639 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA1P49639 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.21■□□□□ 0.34
HOXA1P49639 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC17.21■□□□□ 0.34
HOXA1P49639 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
HOXA1P49639 BX323043.1-201ENST00000641006 1765 ntBASIC17.2■□□□□ 0.34
HOXA1P49639 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HOXA1P49639 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HOXA1P49639 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms