Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YGR161W-AYGR161W-A 1317 nt3.24□□□□□ -1.89
UPF3P48412 YBL100W-AYBL100W-A 1317 nt3.24□□□□□ -1.89
UPF3P48412 YCL020WYCL020W 1317 nt3.24□□□□□ -1.89
UPF3P48412 YSP2YDR326C 4317 nt3.24□□□□□ -1.89
UPF3P48412 YEA4YEL004W 1029 nt3.24□□□□□ -1.89
UPF3P48412 RCN1YKL159C 636 nt3.24□□□□□ -1.89
UPF3P48412 MRPL38YKL170W 417 nt3.24□□□□□ -1.89
UPF3P48412 RPL22AYLR061W 366 nt3.24□□□□□ -1.89
UPF3P48412 NMA111YNL123W 2994 nt3.24□□□□□ -1.89
UPF3P48412 CBP6YBR120C 489 nt3.24□□□□□ -1.89
UPF3P48412 TSC11YER093C 4293 nt3.23□□□□□ -1.89
UPF3P48412 APM3YBR288C 1452 nt3.23□□□□□ -1.89
UPF3P48412 BIT61YJL058C 1632 nt3.23□□□□□ -1.89
UPF3P48412 CHA4YLR098C 1947 nt3.23□□□□□ -1.89
UPF3P48412 YDR338CYDR338C 2088 nt3.23□□□□□ -1.89
UPF3P48412 GPM2YDL021W 936 nt3.23□□□□□ -1.89
UPF3P48412 PDC2YDR081C 2778 nt3.23□□□□□ -1.89
UPF3P48412 KEI1YDR367W 666 nt3.23□□□□□ -1.89
UPF3P48412 RSM28YDR494W 1086 nt3.23□□□□□ -1.89
UPF3P48412 COX23YHR116W 456 nt3.23□□□□□ -1.89
UPF3P48412 YIR040CYIR040C 333 nt3.23□□□□□ -1.89
UPF3P48412 YLL044WYLL044W 447 nt3.23□□□□□ -1.89
UPF3P48412 MST28YAR033W 705 nt3.23□□□□□ -1.89
UPF3P48412 ASI3YNL008C 2031 nt3.23□□□□□ -1.89
UPF3P48412 ARL3YPL051W 597 nt3.23□□□□□ -1.89
UPF3P48412 SUS1YBR111W-A 291 nt3.23□□□□□ -1.89
UPF3P48412 ERT1YBR239C 1590 nt3.23□□□□□ -1.89
UPF3P48412 YCL002CYCL002C 792 nt3.23□□□□□ -1.89
UPF3P48412 YNL193WYNL193W 1677 nt3.23□□□□□ -1.89
UPF3P48412 YKL075CYKL075C 1353 nt3.23□□□□□ -1.89
UPF3P48412 NOP12YOL041C 1380 nt3.23□□□□□ -1.89
UPF3P48412 GPI13YLL031C 3054 nt3.23□□□□□ -1.89
UPF3P48412 TFB1YDR311W 1929 nt3.23□□□□□ -1.89
UPF3P48412 LST4YKL176C 2487 nt3.22□□□□□ -1.89
UPF3P48412 YHR080CYHR080C 4038 nt3.22□□□□□ -1.89
UPF3P48412 MED1YPR070W 1701 nt3.22□□□□□ -1.89
UPF3P48412 GLC3YEL011W 2115 nt3.22□□□□□ -1.89
UPF3P48412 YDR262WYDR262W 819 nt3.22□□□□□ -1.89
UPF3P48412 USE1YGL098W 738 nt3.22□□□□□ -1.89
UPF3P48412 YGR226CYGR226C 210 nt3.22□□□□□ -1.89
UPF3P48412 EST3YIL009C-A 546 nt3.22□□□□□ -1.89
UPF3P48412 RPS21AYKR057W 264 nt3.22□□□□□ -1.89
UPF3P48412 YAL064W-BYAL064W-B 381 nt3.22□□□□□ -1.89
UPF3P48412 VMA6YLR447C 1038 nt3.22□□□□□ -1.89
UPF3P48412 ATX1YNL259C 222 nt3.22□□□□□ -1.89
UPF3P48412 VPS30YPL120W 1674 nt3.22□□□□□ -1.89
UPF3P48412 HFD1YMR110C 1599 nt3.21□□□□□ -1.89
UPF3P48412 AVT2YEL064C 1443 nt3.21□□□□□ -1.9
UPF3P48412 YER066C-AYER066C-A 501 nt3.21□□□□□ -1.9
UPF3P48412 SAE2YGL175C 1038 nt3.21□□□□□ -1.9
UPF3P48412 YHL044WYHL044W 708 nt3.21□□□□□ -1.9
UPF3P48412 RPS21BYJL136C 264 nt3.21□□□□□ -1.9
UPF3P48412 ECM4YKR076W 1113 nt3.21□□□□□ -1.9
UPF3P48412 DAD2YKR083C 402 nt3.21□□□□□ -1.9
UPF3P48412 CDC123YLR215C 1083 nt3.21□□□□□ -1.9
UPF3P48412 NGL1YOL042W 1092 nt3.21□□□□□ -1.9
UPF3P48412 YOR277CYOR277C 309 nt3.21□□□□□ -1.9
UPF3P48412 TIM12YBR091C 330 nt3.21□□□□□ -1.9
UPF3P48412 VHR2YER064C 1518 nt3.2□□□□□ -1.9
UPF3P48412 RPL11BYGR085C 525 nt3.2□□□□□ -1.9
UPF3P48412 DLS1YJL065C 504 nt3.2□□□□□ -1.9
UPF3P48412 CAP1YKL007W 807 nt3.2□□□□□ -1.9
UPF3P48412 YPT52YKR014C 705 nt3.2□□□□□ -1.9
UPF3P48412 YMR181CYMR181C 465 nt3.2□□□□□ -1.9
UPF3P48412 YNL043CYNL043C 321 nt3.2□□□□□ -1.9
UPF3P48412 RPL20BYOR312C 519 nt3.2□□□□□ -1.9
UPF3P48412 AFT2YPL202C 1251 nt3.2□□□□□ -1.9
UPF3P48412 RPL11AYPR102C 525 nt3.2□□□□□ -1.9
UPF3P48412 YNR063WYNR063W 1824 nt3.2□□□□□ -1.9
UPF3P48412 REC8YPR007C 2043 nt3.2□□□□□ -1.9
UPF3P48412 YKL222CYKL222C 2118 nt3.2□□□□□ -1.9
UPF3P48412 BOI1YBL085W 2943 nt3.19□□□□□ -1.9
UPF3P48412 PCL5YHR071W 690 nt3.19□□□□□ -1.9
UPF3P48412 MCR1YKL150W 909 nt3.19□□□□□ -1.9
UPF3P48412 SDS22YKL193C 1017 nt3.19□□□□□ -1.9
UPF3P48412 VPS63YLR261C 327 nt3.19□□□□□ -1.9
UPF3P48412 SLP1YOR154W 1764 nt3.19□□□□□ -1.9
UPF3P48412 LRG1YDL240W 3054 nt3.18□□□□□ -1.9
UPF3P48412 EXO5YBR163W 1758 nt3.18□□□□□ -1.9
UPF3P48412 RMT2YDR465C 1239 nt3.18□□□□□ -1.9
UPF3P48412 NTF2YER009W 378 nt3.18□□□□□ -1.9
UPF3P48412 YER165C-AYER165C-A 357 nt3.18□□□□□ -1.9
UPF3P48412 FMP32YFL046W 624 nt3.18□□□□□ -1.9
UPF3P48412 MIC19YFR011C 513 nt3.18□□□□□ -1.9
UPF3P48412 AIM36YMR157C 768 nt3.18□□□□□ -1.9
UPF3P48412 GOT1YMR292W 417 nt3.18□□□□□ -1.9
UPF3P48412 YNL050CYNL050C 813 nt3.18□□□□□ -1.9
UPF3P48412 CSI2YOL007C 1026 nt3.18□□□□□ -1.9
UPF3P48412 NTC20YBR188C 423 nt3.18□□□□□ -1.9
UPF3P48412 SHQ1YIL104C 1524 nt3.18□□□□□ -1.9
UPF3P48412 SLF1YDR515W 1344 nt3.18□□□□□ -1.9
UPF3P48412 CIN8YEL061C 3003 nt3.17□□□□□ -1.9
UPF3P48412 SNQ2YDR011W 4506 nt3.17□□□□□ -1.9
UPF3P48412 RCY1YJL204C 2523 nt3.17□□□□□ -1.9
UPF3P48412 NET1YJL076W 3570 nt3.17□□□□□ -1.9
UPF3P48412 LST7YGR057C 729 nt3.17□□□□□ -1.9
UPF3P48412 RSR1YGR152C 819 nt3.17□□□□□ -1.9
UPF3P48412 QCR10YHR001W-A 234 nt3.17□□□□□ -1.9
UPF3P48412 PPX1YHR201C 1194 nt3.17□□□□□ -1.9
UPF3P48412 SFT1YKL006C-A 294 nt3.17□□□□□ -1.9
Retrieved 100 of 7,029 protein–RNA pairs in 30.6 ms