Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
RFX3P48380 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.57■□□□□ 0.72
RFX3P48380 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.57■□□□□ 0.72
RFX3P48380 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
RFX3P48380 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.57■□□□□ 0.72
RFX3P48380 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX3P48380 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RFX3P48380 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
RFX3P48380 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX3P48380 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RFX3P48380 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.56■□□□□ 0.72
RFX3P48380 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.56■□□□□ 0.72
RFX3P48380 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX3P48380 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.56■□□□□ 0.72
RFX3P48380 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.56■□□□□ 0.72
RFX3P48380 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.56■□□□□ 0.72
RFX3P48380 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.56■□□□□ 0.72
RFX3P48380 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
RFX3P48380 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
RFX3P48380 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX3P48380 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.55■□□□□ 0.72
RFX3P48380 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX3P48380 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.55■□□□□ 0.72
RFX3P48380 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX3P48380 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX3P48380 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX3P48380 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX3P48380 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
RFX3P48380 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
RFX3P48380 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.54■□□□□ 0.72
RFX3P48380 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
RFX3P48380 CCDC92B-201ENST00000575506 885 ntBASIC19.54■□□□□ 0.72
RFX3P48380 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 AC005229.4-201ENST00000610085 2198 ntBASIC19.54■□□□□ 0.72
RFX3P48380 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
RFX3P48380 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
RFX3P48380 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX3P48380 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
RFX3P48380 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
RFX3P48380 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.53■□□□□ 0.72
RFX3P48380 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.53■□□□□ 0.72
RFX3P48380 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
RFX3P48380 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
RFX3P48380 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
RFX3P48380 AC123595.1-201ENST00000440769 1046 ntBASIC19.53■□□□□ 0.72
RFX3P48380 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.53■□□□□ 0.72
RFX3P48380 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
RFX3P48380 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RFX3P48380 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
RFX3P48380 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
RFX3P48380 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.52■□□□□ 0.72
RFX3P48380 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RFX3P48380 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.52■□□□□ 0.72
RFX3P48380 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.52■□□□□ 0.72
RFX3P48380 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.52■□□□□ 0.72
RFX3P48380 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RFX3P48380 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RFX3P48380 KRT18P14-201ENST00000534205 1250 ntBASIC19.52■□□□□ 0.72
RFX3P48380 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RFX3P48380 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms