Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SOX3P41225 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.62■□□□□ 0.73
SOX3P41225 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX3P41225 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SOX3P41225 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SOX3P41225 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.61■□□□□ 0.73
SOX3P41225 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.61■□□□□ 0.73
SOX3P41225 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SOX3P41225 AC006015.1-201ENST00000429970 570 ntBASIC19.61■□□□□ 0.73
SOX3P41225 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.61■□□□□ 0.73
SOX3P41225 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.61■□□□□ 0.73
SOX3P41225 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.61■□□□□ 0.73
SOX3P41225 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.61■□□□□ 0.73
SOX3P41225 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX3P41225 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX3P41225 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX3P41225 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.6■□□□□ 0.73
SOX3P41225 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX3P41225 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
SOX3P41225 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SOX3P41225 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
SOX3P41225 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
SOX3P41225 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.59■□□□□ 0.73
SOX3P41225 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.59■□□□□ 0.73
SOX3P41225 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.59■□□□□ 0.73
SOX3P41225 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX3P41225 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SOX3P41225 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SOX3P41225 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.58■□□□□ 0.73
SOX3P41225 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SOX3P41225 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SOX3P41225 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SOX3P41225 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SOX3P41225 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SOX3P41225 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.58■□□□□ 0.72
SOX3P41225 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX3P41225 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SOX3P41225 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.58■□□□□ 0.72
SOX3P41225 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX3P41225 AP001160.3-201ENST00000601484 763 ntBASIC19.58■□□□□ 0.72
SOX3P41225 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.58■□□□□ 0.72
SOX3P41225 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX3P41225 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
SOX3P41225 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.58■□□□□ 0.72
SOX3P41225 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX3P41225 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.57■□□□□ 0.72
SOX3P41225 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SOX3P41225 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.57■□□□□ 0.72
SOX3P41225 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SOX3P41225 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SOX3P41225 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX3P41225 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SOX3P41225 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.56■□□□□ 0.72
SOX3P41225 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms